Ruegeria pomeroyi: SPO1680
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Entry
SPO1680 CDS
T00215
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03030
DNA replication
sil03410
Base excision repair
sil03420
Nucleotide excision repair
sil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPO1680 (ligA)
03410 Base excision repair
SPO1680 (ligA)
03420 Nucleotide excision repair
SPO1680 (ligA)
03430 Mismatch repair
SPO1680 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sil03032
]
SPO1680 (ligA)
03400 DNA repair and recombination proteins [BR:
sil03400
]
SPO1680 (ligA)
Enzymes [BR:
sil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SPO1680 (ligA)
DNA replication proteins [BR:
sil03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SPO1680 (ligA)
DNA repair and recombination proteins [BR:
sil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SPO1680 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPO1680 (ligA)
MMR (mismatch excision repair)
DNA ligase
SPO1680 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPO1680 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AAV94965
UniProt:
Q5LST6
LinkDB
All DBs
Position
1786195..1788414
Genome browser
AA seq
739 aa
AA seq
DB search
MTEAEAAQELARLAGLLAQANLAYHTLDAPEISDADYDALKQRNAEIEARFPHLKRPDSP
SEQVGARPGEGFSKVSHAVRMMSLGNAFDDADVADFDRSIRKYLGLDVETALAYTAEPKI
DGLSLSLRYEQGVLVQAATRGDGEVGENVTANARTIADIPARIEGAPEVLEVRGEVYMSH
ADFAALNTRQEAEGGKLFANPRNAAAGSLRQLDAAITRARPLRFFAYSWGELSEPLAETQ
MQAIERLAGLGFQTNPLTRRCADLDAMIAHYRDIEAQRATLGYDIDGVVYKLDDLGLQAR
LGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNATLH
NEDYIAGRDSRGQEIRDGKDIRVGDWVQVYRAGDVIPKIADVDLNKRPEGANPFEFPEQC
PECGSPAIREEGDAVRRCTGGVICPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFHADGWI
REPADIFELRSRYGEGLQQLKNREGWGEKSATNLFQAIDDKRRIPLARLIFALGIRHVGE
VGAKDLSLHYRDWDAMAAALDTARLAALAHRAADTAEEQERQQAQAEGRRARISDTRAAV
IAAQEVPPEAAAAWADLIGVDGIGATLGLSLSDAFANGDERAAFDRLSAHLTVIPPDAPA
RDSPVAGKTVVFTGSLEKMTRAEAKARAEALGAKVAGSVSKKTDLLVAGPGAGSKLKTAE
SLGIETLDEDGWLKLIEGL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggcagaggccgcgcaggagctggcgcggctggcggggctgttggcacaggcc
aatctcgcctatcacacgctggatgcgcccgagatttcggatgcggattatgacgcgctg
aaacagcgcaatgccgagatcgaggcgcgattcccccacctcaaacgtcccgacagcccc
agcgagcaggtgggcgcccgcccgggcgagggattctccaaggtctcccatgcggtgcgg
atgatgtcgctgggcaatgcctttgacgatgcggatgtggcggatttcgaccgctcgatc
cgcaagtacctggggttggatgtcgaaacagcgctggcctatacggccgagcccaagatc
gacgggctgtccctgtcgctgcgctatgaacagggcgtgctggtgcaggcagcgacccgg
ggcgatggcgaggtgggcgagaatgtcaccgccaatgcccgcaccatcgctgatatcccc
gcccggatcgagggcgcgcccgaggtgctggaggtgcgcggcgaggtctatatgagccac
gcggatttcgccgctctcaatacccggcaagaggccgagggcggcaagctgtttgccaat
ccccgcaatgccgccgccggctcgctgcgccaactcgacgctgcgatcacccgggcgcgg
cctttgcgattcttcgcctattcctggggtgagctctcggaaccgctggcagaaacgcaa
atgcaggccatcgaacggctggccggccttggctttcagaccaacccgctgacccgccgc
tgcgctgatctggacgcgatgatcgcgcattatcgcgatatcgaggcgcagcgcgcaacg
ctgggttatgacatcgacggtgtggtctacaagctggacgatctggggctgcaggcgcgg
ctcggctttcggtcgaccacgccgcgttgggcgattgcgcataaattccccgccgaactg
gcctggacccggcttgaggcgatcgacattcaggtgggccgcaccggcgcgctcagcccg
gtggcacggctgaccccggtcaccgtgggcggtgtagtggtgtcgaacgccacactgcat
aacgaggattacatcgccgggcgcgacagccggggacaggagattcgcgacggaaaggat
attcgcgtcggcgactgggtgcaggtctatcgcgccggtgacgtgatccccaagatcgcc
gatgtcgatctgaacaagcggccagagggcgcgaacccctttgagtttccagagcaatgt
cccgagtgcggcagccccgccattcgcgaggaaggcgacgccgtgcgccgttgcaccggc
ggtgtgatctgcccggcgcaggcggtggaaaagctcaagcattttgtcagccgcgccgcc
tttgacatcgaagggctgggcgccaagcaggtggaacagtttcacgccgatggctggatc
cgtgagcccgccgatattttcgagctgcgcagccgctatggcgaggggctgcaacagctg
aagaaccgcgagggctggggtgagaaatcggcaaccaacctgtttcaggccatcgacgac
aagcgccgcattccgctggcccgtctgatctttgccctgggcatccgccacgtgggcgag
gtgggcgccaaggatctgtcgctgcattatcgagactgggacgcgatggcagcggcactg
gacacagcgcgcctcgccgcactcgcccatcgtgccgccgataccgccgaagagcaggag
cgccagcaggcccaggccgagggccgccgggcccgcatcagcgatacccgcgccgctgtg
atcgccgcgcaagaggtgccgcccgaggccgccgccgcctgggccgacctgatcggcgtc
gacgggatcggcgctacgctgggcctgtccttgtccgatgcctttgccaatggtgacgaa
cgtgccgcctttgatcggctgagcgcgcatctgacggtgatcccccccgatgccccggca
cgcgacagcccggttgcgggcaagaccgtggtctttaccggctcgctggaaaagatgacc
cgggccgaggccaaggcccgggccgaggcgctgggggccaaggttgcaggctcggtcagc
aagaagaccgatctgctggtggccgggccgggcgcgggctccaagctcaagaccgccgag
agcctggggatcgaaaccctggacgaagacggctggctgaaactgatcgaggggctatga
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