Simplicispira suum: C6571_16065
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Entry
C6571_16065 CDS
T05361
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
simp
Simplicispira suum
Pathway
simp03030
DNA replication
simp03410
Base excision repair
simp03420
Nucleotide excision repair
simp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
simp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C6571_16065 (ligA)
03410 Base excision repair
C6571_16065 (ligA)
03420 Nucleotide excision repair
C6571_16065 (ligA)
03430 Mismatch repair
C6571_16065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
simp03032
]
C6571_16065 (ligA)
03400 DNA repair and recombination proteins [BR:
simp03400
]
C6571_16065 (ligA)
Enzymes [BR:
simp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C6571_16065 (ligA)
DNA replication proteins [BR:
simp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C6571_16065 (ligA)
DNA repair and recombination proteins [BR:
simp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C6571_16065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C6571_16065 (ligA)
MMR (mismatch excision repair)
DNA ligase
C6571_16065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C6571_16065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
5_3_exonuc
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
AVO42608
UniProt:
A0A2S0N382
LinkDB
All DBs
Position
3468211..3470361
Genome browser
AA seq
716 aa
AA seq
DB search
MPKNLDLFSAPAQSEQAQAAIKIEALRQQINRWAHLYYVQDAPEVPDAEYDRVFRALQAL
EAQFPGLVTPESPTQRVGGAPRPELTPVRHAVPMLSIHTETDVSPAGAQAFDARVRRELG
LAADAPPVAYVAELKFDGLAMNLRYEAGVLVQAATRGDGEVGEDVTHNIRTMRQIPLRLP
SDVPPVLEVRGEVYMARADFENLNEAQRERGQKTFINPRNTAAGAVRQLDPAIAAQRPLK
FFAYGFGEVTPVEQGGPDFATHFDLLQQLKQWGFPVAAQTTQALGASELIAFHERIAAER
DQLPYDIDGVVYKVDSLALQRQLGFKTREPRWAVAHKYPAQEMVTRIEGIDVQVGRTGKL
TPVARLAPVFVGGVTVTNATLHNLFEIRKKGVRVGDQVVVRRAGDVIPEVVGTLPPLADS
PEVIFVDGVPVKHIHGHPPRETYVPNFRMPTHCPICGSDVVREPGEANHRCTGGLFCPAQ
RKEALLHFAARRAMDIDGLGEKLVDQLVDGAVVHTLPDLYRIGLVGLLALERMGEKSAQN
LLAALEKSKSTTLARFLFALGIRHVGEATAKDLARHFGSLDAILNATTEELLQVPDVGPV
VAEAIHTFLAQPHNLEVVEQLRACGVHWPEGPPVERTTLPLAGQTVVLTGTLPTLTREDA
KAMLEAAGAKVAGSVSKKTHYVVAGEDAGSKLAKAQELGVAVLDKTGLMALLGKSA
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagaatttagaccttttttcggctccagcgcaatcagagcaagcgcaagcagct
ataaaaatagaagcattgcgccagcagatcaaccgctgggcgcacttgtactacgtgcag
gacgcgcccgaggtgccagacgcggaatacgaccgcgtgtttcgcgcgctgcaggcgctg
gaggcgcagttccctgggctggtgacacccgagtcacccacccagcgcgtcggtggcgcg
ccgcgcccggagctgacgccggtgcgccacgccgtgcccatgctgtccatccacaccgaa
accgatgtgtcgcctgccggtgcgcaggcgtttgacgcgcgcgtgcggcgtgaactcggc
ctggcggcggatgcgccacccgtggcttacgtggcagagctcaagttcgacggcctggcc
atgaacctgcgctacgaggccggcgtgctggtgcaggccgccacgcgcggcgatggcgaa
gtcggcgaggacgtgacgcacaacatccgcaccatgcggcagattccgctgcggctgccg
agcgacgtaccgccggtgctggaagtgcgcggtgaggtctacatggcgcgggctgacttt
gaaaacctgaacgaagcccagcgcgagcgcggccagaaaactttcatcaacccgcgcaac
acggccgccggcgccgtgcgccagctcgatccggccattgcagcgcagcggccgctgaag
ttttttgcctatggctttggggaggtcacgccggtggagcagggcggcccggatttcgcc
acgcacttcgacctgctccagcaactgaagcaatggggttttccggtcgcagcgcagacc
acacaagcgctgggagctagcgaattgatagcgttccacgaacgcatcgccgccgaacgc
gaccagctcccctacgacatcgacggcgtggtctacaaggtcgattcgctcgccctgcag
cgccagctcggcttcaagacgcgcgagccgcgctgggccgtggcgcacaagtacccggcg
caggagatggtgacgcgcatcgaaggcatcgacgtgcaagtcggccgcaccggcaagctc
acgcccgtggcgcggctggcgccggtgtttgtgggcggcgtcacagtgaccaacgccacg
ctgcacaacctgttcgagattcggaaaaaaggcgtgcgcgtgggcgatcaggtggtcgtg
cgccgcgcgggcgacgttatcccggaagttgtaggcacattgcctcccctagctgactct
cctgaagtcatttttgtcgacggggtgcctgtaaagcatattcacggacatcctccgcga
gagacgtatgtgcccaactttcgcatgcccacacattgccccatctgcggcagcgacgtg
gtgcgcgaacccggcgaagccaaccaccgctgcaccggcgggctcttttgcccggcacaa
cgcaaggaggcgctgctgcactttgccgcgcgccgcgccatggacattgacggcctgggc
gaaaaactggtggatcaactagtggatggcgctgtggtgcacaccttgccggacctgtac
cgcattggtctcgtcggcttgttggcgctggagcgcatgggcgaaaaatcggcacaaaac
ctgttggcggcgctggagaagtcgaaaagcaccacgctggcacgcttcctgtttgcactg
ggcatccgacatgtcggcgaggccaccgccaaggacctggcgcggcatttcggcagtctg
gatgccatcctgaacgccaccaccgaggaactgttgcaggtgcccgatgtaggtccagtc
gtcgcagaagccatccacaccttccttgcgcagccgcacaacctcgaagttgtcgaacaa
ctgcgcgcctgcggcgtgcattggccggaaggcccgcccgtcgagcgcaccaccttgccc
ctcgccggccagacggtggtgctcaccggcacgctccccacgctcacccgcgaggacgcc
aaagccatgctggaagccgctggtgccaaggtcgcaggctcggtcagcaagaagacgcac
tatgtggtggcgggggaggatgccggcagcaaactcgcaaaagcgcaagagctgggggtg
gctgtgctcgacaaaaccggtctgatggcgctgctgggcaagtcggcatga
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