Sphingopyxis indica: KNJ79_18965
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Entry
KNJ79_18965 CDS
T09492
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
sina
Sphingopyxis indica
Pathway
sina03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sina00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KNJ79_18965 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sina03400
]
KNJ79_18965 (nth)
Enzymes [BR:
sina01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
KNJ79_18965 (nth)
DNA repair and recombination proteins [BR:
sina03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KNJ79_18965 (nth)
Prokaryotic type
KNJ79_18965 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
HHH_5
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
WOF43175
LinkDB
All DBs
Position
4009550..4010209
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AA seq
219 aa
AA seq
DB search
MTKAEIFEFFRRLAELDPDPRTELDYGNTYQLLVAVVLSAQATDVGVNKATRRLFEAVKT
PQAMLDLGEAGLKQHIKTIGLFNAKAKNVIALSEILVREHGGEVPADRDALVELPGVGRK
TANVVMNSAFGAETFAVDTHIFRVGNRTGLAPGKTPLAVEKQLEKKVPAPFRVGAHHWLI
LHGRYICKARTPECWRCPVADLCRYKPKTLAPKAKKAAA
NT seq
660 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaagccgaaattttcgaattcttccgccgcctcgccgaactcgaccccgatccc
cggaccgaactcgactatggcaacacctatcaattgctcgtcgcggtcgtgctttcggcg
caggccaccgacgtcggggtgaacaaggcgacgcgacggctgttcgaggcggtgaagacc
ccgcaggcgatgctcgacctcggcgaagcggggctcaagcagcacatcaagacgatcggc
ctgttcaacgccaaggcaaagaatgtcatcgcgctttccgaaatcctcgtacgcgagcat
ggcggcgaggtgcccgccgaccgcgacgcgctggtcgaactacccggcgtcgggcgcaaa
accgccaatgtcgtgatgaactcggcgttcggggcggagaccttcgcggtcgacacgcat
atctttcgcgtcggcaaccgcaccggccttgcgcccggcaagacacccctcgcggtcgag
aaacagctcgaaaaaaaggtcccggcgccgttccgcgtcggcgcgcatcattggctgatc
ctccacggccgctacatctgtaaggcgcgcacccccgaatgctggcgctgcccggtcgcc
gatctgtgccgctacaagcccaagacattggcaccaaaggcgaaaaaggccgcagcctga
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