Sphingobium indicum B90A: SIDU_06470
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Entry
SIDU_06470 CDS
T04604
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sinb
Sphingobium indicum B90A
Pathway
sinb03030
DNA replication
sinb03410
Base excision repair
sinb03420
Nucleotide excision repair
sinb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sinb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SIDU_06470
03410 Base excision repair
SIDU_06470
03420 Nucleotide excision repair
SIDU_06470
03430 Mismatch repair
SIDU_06470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sinb03032
]
SIDU_06470
03400 DNA repair and recombination proteins [BR:
sinb03400
]
SIDU_06470
Enzymes [BR:
sinb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SIDU_06470
DNA replication proteins [BR:
sinb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SIDU_06470
DNA repair and recombination proteins [BR:
sinb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SIDU_06470
NER (nucleotide excision repair)
GGR (global genome repair) factors
SIDU_06470
MMR (mismatch excision repair)
DNA ligase
SIDU_06470
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SIDU_06470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DNA_ligase_ZBD
BRCT
HHH_2
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
APL94179
UniProt:
A0A1L5BMT1
LinkDB
All DBs
Position
complement(1369717..1371852)
Genome browser
AA seq
711 aa
AA seq
DB search
MTDLTSMTEAEAANRLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHL
IRSDSPNAQVGAAPTSALKKVQHAVRMMSLDNGFADEDIAEFIARVRRFLALPEDAPVAL
TAEPKIDGLSCSLRYEKGELVLAATRGDGTTGEDVTANVRTIADIPERLTGDTVPDLFEV
RGEVYMAKADFVALNERLLAEAEDPEKARQFANPRNAAAGSLRQKDAAVTASRPLRFLAH
GWGEVSAVPAETQLGVMQAIASWGLPVSDRLTCVDTLESLIAHYRAIEAARAELPFDIDG
VVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPV
TVGGVVVSNVTLHNADEIARLGVRPGDRIVVQRAGDVIPQVVDNLTRDDPRAPFAFPDHC
PVCQSEAVREEGEVDIRCTGGLICPAQRFERLRHFVSRAALDIEGLGEKSIEEFLDLGWI
AEPADIFRLKTHRADLMGREGWKEKSVDNLLAAIEAKRQPDAARLLFGLGIRHIGAVTAR
DLLKRYTRLPAIHALALEIIALRDAAQPAEGEEESRFRNRLDKAIAEQIGVENVGSAVGH
ALADFFHEPHNVEVWNDLLSEVSPPDYVVETTASAVTGKTVVFTGKLETMSRDEAKAQAE
RLGAKAAGSVSAKTDLVVAGPGAGSKLKQAAALGIEVIDEAAWAEIVKAAG
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccttacgtccatgaccgaagccgaagccgccaaccgcctcatgcgcctggcg
cgggagattgcgcgccacaaccggctctatcatgatcaggaccagccggagatcaccgac
gccgcctatgacgcgctgatccgcgagaataacgcgctggaagctgccttcccgcacctt
atccgcagcgattcccccaacgcccaggtcggcgcggcacccacttccgccctcaagaag
gtccagcacgccgttcgcatgatgagcctcgacaacggcttcgcggacgaggacatcgcc
gaattcatcgcccgtgtccgccgcttcctcgcgctccccgaagacgcgcccgtcgccctc
accgccgaacccaagatcgacggcctgtcctgctcgctgcgctatgagaagggcgaactg
gtcctcgccgccacgcggggcgacggcacgacgggggaggacgtcaccgccaatgtccgc
accattgccgacatccctgagcgcctgaccggcgacaccgtccccgacctgtttgaagtc
cggggcgaagtctatatggccaaggccgatttcgtggccttgaacgaacgcctgctggcc
gaagccgaagaccccgaaaaggcccgccagttcgccaatccccgcaacgccgccgccggt
tcgctgcgccagaaggacgccgccgtcaccgccagccgtccgctgcgcttcctcgcccat
ggctggggcgaagtcagcgccgtccccgccgaaacccagctcggcgtcatgcaggccatc
gcaagctggggcctgcccgtctccgaccgcctgacctgcgtcgacacgctggaatcgctg
atcgcccactatcgcgccatcgaagccgcccgcgccgaactgcccttcgacatcgatggc
gtcgtctacaaggtcgaccgcctcgactggcaacagcgcctgggcttcgtcgccaaggcc
ccgcgctgggccattgcccataaattccccgccgaacgggcgcagaccacgctggaggcc
atcgacatccaggtcggccgcaccggcaagctgaccccggtcggccgcctgacccccgtc
accgtcggcggcgtcgtcgtctccaacgtcaccctgcacaatgcggacgagatcgcccgc
ctcggcgtgcgccccggcgaccgcatcgtcgtccagcgcgcaggcgacgtcatcccgcag
gtggtcgacaacctcacccgcgacgatccgcgcgcgcccttcgccttccccgaccattgc
cccgtctgccagtccgaagccgtgcgcgaggaaggggaggtcgacataagatgcaccggc
ggcctcatctgccccgcccagcggttcgaacggctgcgccatttcgtcagccgcgccgcg
ctcgacatagaggggctgggcgaaaagagcatagaggaatttctcgacctcggctggatc
gcggaaccggccgacatcttccgcctgaagacgcaccgcgccgacctgatgggccgggag
gggtggaaggagaaatccgtcgacaatctcctcgccgccatagaggccaagcgccagccc
gacgccgcccgcctgctctttggcctgggcatccgccatatcggcgcggtgacggcccgc
gacctgctgaaacgctataccaggctgcctgccatccacgccctcgcgctggagatcatc
gccctgcgcgacgccgcgcagcctgcggagggggaggaggaaagccgcttccgcaaccgc
ctggacaaggccatcgccgaacagatcggggtcgagaatgtgggctcggcggtcggccac
gcgctggccgatttcttccacgaaccgcataatgtggaggtctggaacgacctgctgagc
gaagtctccccgcccgactatgtggtcgaaaccaccgccagcgcggtcaccggcaagacc
gtcgtcttcaccggcaagctggaaaccatgagccgcgacgaggcgaaggcgcaggccgaa
cgcctgggcgccaaggccgccggatcggtcagcgccaagaccgacctggtcgtcgcaggc
cccggcgcgggttccaaactgaaacaggccgccgctctgggcatcgaagtgatcgacgaa
gcggcctgggccgaaatcgtcaaggctgcgggatag
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