Stenotrophomonas indicatrix: DAIF1_26820
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Entry
DAIF1_26820 CDS
T07128
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sinc
Stenotrophomonas indicatrix
Pathway
sinc03030
DNA replication
sinc03410
Base excision repair
sinc03420
Nucleotide excision repair
sinc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DAIF1_26820 (ligA_1)
03410 Base excision repair
DAIF1_26820 (ligA_1)
03420 Nucleotide excision repair
DAIF1_26820 (ligA_1)
03430 Mismatch repair
DAIF1_26820 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sinc03032
]
DAIF1_26820 (ligA_1)
03400 DNA repair and recombination proteins [BR:
sinc03400
]
DAIF1_26820 (ligA_1)
Enzymes [BR:
sinc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DAIF1_26820 (ligA_1)
DNA replication proteins [BR:
sinc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DAIF1_26820 (ligA_1)
DNA repair and recombination proteins [BR:
sinc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DAIF1_26820 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DAIF1_26820 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
DAIF1_26820 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DAIF1_26820 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QBR45108
LinkDB
All DBs
Position
complement(2934622..2937087)
Genome browser
AA seq
821 aa
AA seq
DB search
MSPSPAERAEDLRRQIAQANRAYHELDAPEIPDVDYDRLVRELEALEREHPELARADSPT
QQVGARPSGRFAEVTHAVPMLSLSNAFSDEEVADFVRRIDERLRRGTLRFSAEPKMDGLA
ISLRYEDGHFVLGATRGDGSTGEDVTANLREIGDIPKRLKGRDWPDVLEVRGEVYMARAD
FEAYNERARLHGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFTYGTGEVQGGELPDTHS
GTLAQLRDWGFPVSDLCKVVEGSDGLLAYYRDIGERRDGLAFDIDGVVYKLDDRAGQQAM
GFVSRAPRWAIAHKFPAQEQSTTLEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHN
ADQIARLDVRVGDSVIVRRAGDVIPEVVSVILDRRPAGTTPWQMPTTCPVCGSEIVREEG
AAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVRSVADLYRLTRD
QLLHLKLVLDAEDPSALAASLKLHLPAEGSGAVLNAVLKLDGNDAGWRAQALAQPAAFEW
NTKKIATKWADNLIAAIDASRDATLERLLFALGIEHVGESTAKALAQWFGDLALIRRLPW
PLFKRVPDIGGEVARSLGHFFEQEGNQQAIDALLQVGQVRISDVHPPSAKLREGLDLAQL
LVEAEIPGITRLRAEKLVAALPSAQAVLDAEHGQFVNAGLPDDTARGVADWLDSEGHGAM
LLAAEVEMKHILASAPALAEVVAGPLDGQTVVLTGTLAQLNRDTAKERLEALGAKVSGSV
SKKTSFVVAGTEAGSKLDKAQSLGVPVWDEERLLAYLAEHE
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgagccccagccccgccgaacgtgccgaagacctgcgccggcagatcgcccaggccaat
cgcgcctatcacgagctggatgcgccggagatccccgacgtcgactacgaccgtctggtg
cgtgagctggaggcgctggagcgcgagcatccggagctcgcccgtgccgacagcccgacc
cagcaggtcggggcacgcccgtccggccgcttcgccgaagtcacccatgcggtaccgatg
ctgtcgctttccaatgctttcagtgatgaggaagtggccgacttcgtgcgccgcatcgat
gagcgcctgcgccgcggcaccctgcgtttttccgccgaaccgaagatggacggcctggcg
atcagcctgcgttacgaggacggtcatttcgtgctgggcgccacccggggcgatggcagc
accggtgaggacgtgactgccaacctgcgcgagatcggcgacattcccaagcgcctgaaa
ggcagggactggccggatgtgctggaagtgcgcggtgaggtctacatggcccgcgccgac
ttcgaggcctacaacgagcgcgcgcgcctgcacggtggcaaggtgctggccaatccgcgc
aatgccgcggccggttcgctgcgccagcttgacccgaagatcagcgcgcagcgcaggctc
agtttcttcacctacggtaccggtgaagtgcagggtggtgagctgcccgatacgcactcg
ggcacgttggcgcagctgcgcgactggggtttcccggtcagcgacctgtgcaaggtggtg
gaaggcagcgacggcctgctggcgtactaccgtgacatcggcgagcgtcgcgacggcctg
gcattcgacattgatggcgtggtctacaagctcgatgaccgggccggccagcaggccatg
ggcttcgtgtcgcgcgcaccacgctgggccatcgcgcacaagttcccggcgcaggaacag
agcactacgctggaggccatcgaaatccagatcggccgtaccggtgccgccaccccggtg
gcgcgccttgcgccggtcgcggtggccggtgtgatcgtctccaatgccaccctgcacaac
gccgaccagatcgcgcgcctggatgtgcgcgtgggcgacagcgtgatcgtgcgccgcgcc
ggcgatgtgattccggaagtggtcagtgtcattctcgaccgtcgtcccgccggcaccacg
ccctggcagatgccgaccacctgcccggtgtgcggctcggagatcgtgcgcgaggaaggg
gctgctgcctggcgttgttcgggcgagctgtcctgcccggcgcagcgcaaggaggccatc
gcccacttcgcctcgcgacgggcgatggatatcgacggtcttggcgacaagtacatcgaa
accctggtggacgccggcatcgtcaggagcgtggctgatctgtaccgcctcacccgcgac
cagctgctgcacctgaagctggtgctggatgctgaagatccttccgcgctcgcggccagc
ctgaaactgcacctgccggccgaaggcagcggcgcggtgctcaacgctgtgttgaagctg
gatggcaacgacgcggggtggcgcgcgcaggcactggcgcagccggcagcgttcgaatgg
aacacaaagaagatcgcgaccaaatgggctgacaacctgatcgctgcgatcgatgccagc
cgtgatgcgacgctggagcgactgctgttcgcactgggcatcgagcacgtcggcgagagc
accgccaaggcactggcacagtggtttggcgatctggcgttgatccgccgtctgccgtgg
cctttgttcaagcgcgtgccggatatcggtggcgaagtggcgcgctcgctgggccacttc
ttcgaacaggaaggcaaccaacaggccatcgacgcgctgctgcaggtggggcaggtgcgc
atcagcgacgtgcacccgccaagtgcaaagctgcgcgaggggctggatcttgcccagctg
ctggtcgaagcggagattcccggcattacgcgcctgcgcgcggagaagctggtggccgca
ctgcccagcgcgcaggcggtgctggacgccgagcacggccagttcgtcaacgccggtctg
cccgatgacaccgcgcgcggcgtcgctgactggctggacagcgagggccatggcgcgatg
ttgctggccgccgaagtggagatgaagcacatcctggccagtgcgccggccctggccgaa
gtggtggccggtccgctggacgggcagacggtggtgcttaccggcacgctggcccagctc
aatcgcgataccgccaaggagcgcctggaggcgctgggcgccaaggtatccggcagcgtg
tcgaagaagaccagtttcgtggtggcaggcaccgaggcgggttcaaagctggacaaggcg
caatcgctgggcgttccggtgtgggatgaagagcgcctgctggcctacctggccgaacac
gagtga
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integrated database retrieval system
