Sesamum indicum (sesame): 105173899
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Entry
105173899 CDS
T04135
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
105173899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sind03400
]
105173899
Enzymes [BR:
sind01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105173899
DNA repair and recombination proteins [BR:
sind03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
105173899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
TPGS1_C
Motif
Other DBs
NCBI-GeneID:
105173899
NCBI-ProteinID:
XP_020553403
UniProt:
A0A8M8V2U4
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All DBs
Position
LG11:10418958..10431557
Genome browser
AA seq
1222 aa
AA seq
DB search
MSETKFSVMVSLFNWMQKSKSSSVKRSKFRKFLDTFCRPNNGEDYFSAIRLILPGLDRER
GSYGLREHVLATCLIDAIGMSRDSPDSQRLLNWRKGGPRSGAFAGNFSLIAAEVLQQRQG
MTSGGLTIKELNELLDRLASSENRSDKTSILSDLIRKTNAQEMKWIIMIILKDLKLGISE
RSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGRPVRPQLALRVSNAAAA
WKKLHGKEVVVECKFDGDRIQIHKNGADINFFSRNFLDHPEYEHGMSDVIRRNILIDRCI
LDGEMLVWDASANRFAEFGSNQEIAKAAKEGLDSDRQLCYVAFDILYAGDTSVIHRSLKE
RHQLLQKVVKPVAGRLEILVPNGGLNAHRPAGEPCWSLIVHDIDGVERFFKETIDNRDEG
IVLKDLNSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAE
RPASNTYPRRFVSFCRVGTGLSDEELNAVVTKLKPYFRKYEYPKKPPPSFYQVTNNSKER
PDVWVESPEKSIIVSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVEL
VHSSNGTTQRVMDNAVMLEDKPKRAKSSRGGKKNVSVVPSHFIQTDVSEVKGETSIFSNM
IFYFVNLPSSHSLDSLHKMVVENGGTFSMNLNNSVTHCIASESKGIKFQAAKHQGDVIHS
SWLFDCCSQKKLLPLQPKHFLFLSNASKNKLEEEIDEFSDSYYLDLNVTDLKQILCNIGK
AEDSKAIEYYKKKFCPREEWIRFHGCCIYFFHLRKNTSWEVPLELAMRRMKIGICNGGGS
VAETLSHATHLVIVSSPQTDMDFGTILNSFSKEEKRHLRSTRLQIVESRWLDDCFDKDQK
LSEESYSLRAQGFLESLAGDSNEDDLTREEYRSLEIGSKDVSSSYGVRNSNATSDKPRIV
SLPNRDGKRKRGRPSGMSTRKGKSVVNRRTRPRAGKNPAKIDENESDNGASSDDKEELEV
GGKSDVGSEMLKSKGRSSFNQPKRTARAQIRNKPAKIGGNESDKDPSSEEQSMEQDFEVK
RANNGPSDTANLHVPEFQKKEAEKDSTSEKGKEAELGVEERYKPGIRVDETNEVGSGYGG
STCYNDRLEDTVDPVQAMLLDMVPILATKKVESAIPVSDEVKTRHPDPAPEEEKIPLDDE
TKPVKKRKVSYKDVANELLKDW
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagacaaagttcagtgtgatggtgagcctattcaattggatgcagaagagcaag
tcctcctccgttaagcgctccaaattccgcaagtttctcgacacattctgccgccccaac
aacggcgaagactacttctccgccatccgcttgatcctgcctggcctggaccgcgagcga
ggatcctacggactccgcgagcatgtactggccacgtgcctgattgacgccatcggcatg
tctcgtgactcccccgactctcagcgccttctcaactggcgcaagggcggccctaggtcg
ggtgctttcgccgggaatttctctctcatcgccgcagaggttctacaacagaggcagggc
atgacttcaggaggcctgactataaaagaactgaatgaattgcttgatcggttggcctcc
agtgagaataggtcggacaagacttccattctttctgatctcatcaggaaaacaaatgct
caagaaatgaagtggattattatgataattctcaaagatcttaagttgggaataagtgaa
aggagcatatttcatgaatttcaccccgatgctgaggacttgttcaatgtaacctgtgat
ctaaaactagtttgtgaaaaattgcgagatcgtagtcagcggcataagcgccaggacatt
gaagtcggcagacctgttcgcccgcaactagctttgagggtcagcaatgcagctgctgca
tggaaaaagcttcatggaaaggaagtcgttgttgagtgcaaatttgatggtgatcgcatc
caaatccataagaatggagcagatataaattttttctcgaggaattttcttgatcatcca
gagtatgaacatggcatgtcagatgttataagaaggaatatcctgattgataggtgtatt
cttgatggtgaaatgttggtttgggatgcttcagcaaatcgatttgcagagtttggttca
aatcaagaaatagccaaggccgcaaaggaggggcttgatagtgatcgacagttgtgctat
gttgcatttgacattctttatgctggagatacaagtgttattcaccgaagcttgaaggag
aggcatcaacttcttcaaaaagttgtcaaaccagtagcaggtcgtttggagattttggtt
cctaatggtggtctcaatgcacatcgtcctgctggggaaccatgttggtcgctaattgtt
cacgatattgatggtgttgagagatttttcaaagaaaccattgacaacagagatgaagga
attgttttgaaagatcttaactccaaatgggaacctagtgatcgaagtggaaagtggcta
aagttaaagcctgagtacattcgagcaggctcagatttggatgttctaatcatagggggc
tactacggttctggacgccgtggaggtgaggtagcacaatttcttgtgggccttgcagag
cgtccagcctcaaacacatatcccagacgatttgtttcgttttgcagagtgggtacagga
ctctctgatgaggagcttaatgctgttgtcaccaaattgaagccttatttcaggaaatac
gaatatccaaagaagccacctccaagcttctatcaagttacaaataactcaaaggagaga
ccagatgtttgggttgaaagcccagaaaaatcaattatagtttccatcaccagtgatatt
cgaacaatcagatccgaggtatttgctgctccatatagtttgagatttccacggattgat
cgtgtcagatacgacaaaccttggcatgaatgccttgatgtacagtcatttgttgaattg
gtacattcaagcaacggcacaacgcagagggtgatggataatgcagttatgctggaagat
aaaccaaaacgtgcaaagtcatctagaggagggaagaagaatgtttcagtagttccttcc
cactttattcagactgatgtttctgaagttaagggtgaaacatcaatattttcaaacatg
attttctactttgtaaatttaccatcatcccattctcttgattccttgcataaaatggtg
gttgagaatggtggcactttctctatgaatctaaacaattcagttactcactgtattgcc
tctgagagtaaagggatcaagtttcaggctgcaaagcaccaaggagatgttattcattcc
tcttggctcttcgactgttgctcgcagaagaagcttcttcctttacagccaaagcacttc
ctttttctctccaatgcgtcaaagaacaagctagaagaagaaattgatgaattctctgac
tcctactatttggatctgaatgtgacagaccttaaacagatcttatgcaacattggtaaa
gctgaagattcgaaagcaatagagtattacaagaaaaaattctgtccgagggaggaatgg
attcgatttcatggttgttgcatttacttcttccatctaagaaaaaatacgagctgggaa
gttccactggaacttgcaatgagaagaatgaagattggaatttgcaatggtggtggaagt
gttgcagagactctttctcatgctactcatttagtgattgtctctagtccacagactgat
atggactttggtacgatattgaatagtttctcaaaagaggagaagcgtcacttgcggagt
acaagattgcaaattgtcgagtcccggtggttggatgactgttttgacaaggaccagaag
ttgtcagaggagagttatagtttgagagcccagggttttctggagtctttagctggagac
agtaatgaagatgatcttactagagaagaatatcggagcttggaaataggatcgaaggat
gtatcatcttcttatggtgtgagaaacagcaatgctacatcagacaagccaagaattgtc
agcttgcctaatagggatggaaaaagaaaaaggggaagacccagtgggatgagcaccaga
aaaggaaaatcagttgtcaaccgaagaacaaggccacgagctggaaagaatcctgctaag
atcgatgaaaatgaatcagataatggtgcttcttcggatgacaaggaagaacttgaagtt
ggcggcaaaagtgatgtgggctctgagatgttaaaaagtaaaggaagatcaagttttaat
caacccaagagaacagcaagggctcagattagaaacaagccagcgaagatcggtggaaat
gaatcagataaagacccctcttctgaagagcagagtatggaacaagattttgaagtcaag
cgagcaaataatgggccttctgacactgcaaacttacatgttcccgaatttcaaaagaaa
gaggctgaaaaagactccacatcagaaaaaggcaaagaagctgaactgggggttgaggaa
cgttataaacctggaataagggttgatgaaacaaatgaagttggatctggatacggtggc
agcacctgttacaatgaccgactagaagacactgttgatccagttcaagctatgttactc
gacatggtacccattcttgctacaaagaaagttgaaagtgcgatccccgtttctgatgaa
gttaaaacgcgacatcctgatccggcccctgaagaggagaaaatacctttagatgatgaa
acgaaaccggtcaagaaaagaaaagtaagctacaaggatgtcgctaatgaactgctcaag
gattggtga
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integrated database retrieval system
