Streptomyces inhibens: KI385_31165
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Entry
KI385_31165 CDS
T08140
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sine
Streptomyces inhibens
Pathway
sine03030
DNA replication
sine03410
Base excision repair
sine03420
Nucleotide excision repair
sine03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sine00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KI385_31165 (ligA)
03410 Base excision repair
KI385_31165 (ligA)
03420 Nucleotide excision repair
KI385_31165 (ligA)
03430 Mismatch repair
KI385_31165 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sine03032
]
KI385_31165 (ligA)
03400 DNA repair and recombination proteins [BR:
sine03400
]
KI385_31165 (ligA)
Enzymes [BR:
sine01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KI385_31165 (ligA)
DNA replication proteins [BR:
sine03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KI385_31165 (ligA)
DNA repair and recombination proteins [BR:
sine03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KI385_31165 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KI385_31165 (ligA)
MMR (mismatch excision repair)
DNA ligase
KI385_31165 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KI385_31165 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
UKY52825
LinkDB
All DBs
Position
6851330..6853546
Genome browser
AA seq
738 aa
AA seq
DB search
MAGEQHAAESKVPAAAREKHAQLAEQIEEHRFRYYVKDAPIVSDAEFDTLLRALEALEDE
YTELRTPDSPTQKVAGAYATEFTEVEHRERMLSLDNAFDNDELAAWAERIAGELGGDPKS
AGYHFLCELKVDGLAVNLTYEQGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGERIP
DLVEVRGEVYFPMEKFLELNERLVADGKPPFANPRNAAAGSLRQKDPKVTAGRPLHMVVH
GLGAREGLEIDRLSQAYDLLKEWGLPTATHNRVVDSLEEVREFIAHYGDPETRRTAVEHE
IDGVVVKLDEIRLQGRLGSTSRAPRWAIAWKYPPEEVNTKLVDIRVGVGRTGRVTPYAVV
EPVTVAGSEVEFATLHNQDVVKAKGVLIGDTVVIRKAGDVIPEILGPVVDLRDGDEREFV
MPAECPECGAALQPAKEGDIDLRCPNARSCPAQIRERLFYLAGRKSLDIENFGYVAATAL
SQPLEPAEPPLKDEGDLFSLSIEQLLPIKSYVLDPDSGLPKRDPKTGREKVVTFFANQKG
EPKKNALAMLENIQAAKQRPLARILTGLSIRHVGPVAAEALAREFRSIDRIRDADETELA
AVDGVGATIAASLKQWFAEDWHQQIIEKWRAAGVRMEEERTGDEGPRPLEGVTVVVTGTL
QSHTRDGAKEALQNLGAKVTGSVSKKTGFVVVGDNPGSKYDKAMQLKVPVLDDDGFAVLL
EQGPDAARAVAVTPPEEE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggctggcgaacagcacgcagcggaatccaaggtgcccgcagcggcgcgggagaagcac
gcgcagctcgctgagcagatcgaggagcatcgcttccggtattacgtgaaggacgccccg
atcgtcagcgacgcggagttcgacacgctgctgcgcgccctggaggccctggaggacgag
tacacggagctgcgcaccccggattcgccgacccagaaggtcgccggggcgtacgccacg
gagttcaccgaggtcgagcaccgcgagcggatgctctcgctcgacaacgccttcgacaac
gacgagttggcggcctgggccgagcggatcgccggtgagctgggcggcgatcccaagagc
gccggctatcacttcctgtgcgagctgaaggtcgacggtctcgcggtcaacctcacctac
gagcagggccggctgacccgcgccgccacccgtggcgacgggcgtacgggcgaggacatc
acccccaacgtccgtacgatcgccgagatcccgcaccgcctgaagggcgagaggatcccg
gatctggtcgaggtgcgcggggaggtctacttcccgatggagaagttcctggagctcaac
gagcggttggtggccgacggcaagccgccgttcgccaacccccgtaacgccgcggccggt
tcgctgcgccagaaggaccccaaggtcacggccggccgcccgctgcacatggtcgtgcac
ggcctgggcgcccgcgagggcctggagatcgaccggctgtcgcaggcgtacgacctgctc
aaggagtggggcctgccgacggccacgcacaacagggtcgtcgactccctggaggaggtg
cgggagttcatcgcccactacggcgaccccgagacccgccgtacggccgtcgagcacgag
atcgacggagtggtcgtcaagctggacgagatccgcctccagggacggctgggctcgacc
tcgcgggcgccgcgctgggcgatcgcctggaagtacccgccggaggaggtcaacaccaag
ctggtcgacatccgcgtcggcgtcggccgcacgggacgggtcacgccgtatgccgtggtc
gagccggtgacggtggccgggtccgaggtggagttcgcgaccctgcacaaccaggacgtg
gtcaaggccaagggcgtgctgatcggcgacaccgtcgtgatccgcaaggccggcgatgtc
atcccggagatcctcggtccggtcgtcgatctacgggacggcgacgagcgggagttcgtg
atgccggccgagtgccccgagtgcggggcggcgctgcagcccgccaaggaaggcgatatc
gacctgcggtgccccaacgcccgttcctgccccgcccagatccgtgagcggctcttctac
ctggccggccgcaaaagcctggacatcgagaacttcggctatgtcgcggccacggcgctc
agtcagccgctggagcccgccgagccgccgctgaaggacgagggtgatcttttcagcctc
tccatcgagcagctgctgcccatcaagtcgtacgtcctcgaccccgactccggtctgccc
aagcgcgatccgaagaccggccgggagaaggtcgtcaccttcttcgccaaccagaagggc
gagccgaagaagaacgccctggccatgctggagaacatccaggccgccaagcagcgcccg
ctggcccggatcctcaccggtctgtcgatccgccatgtgggcccggtggcggccgaggca
ctggcgcgcgagttccgctcgatcgaccgcatcagggacgcggacgagaccgagctggcc
gccgtggacggtgtcggggccacgatcgccgcctcgttgaagcagtggttcgccgaggac
tggcaccagcagatcatcgagaagtggcgggccgcaggggtccgaatggaggaggagcga
acgggtgatgagggcccgcggccgctggaaggcgtcaccgtcgtcgtaacgggcacactt
cagtcacacaccagagatggcgcgaaagaggccctccagaacctcggagcgaaggtgacc
ggatccgtttcgaagaagaccggtttcgtagtggtgggcgacaaccccggttcgaagtac
gacaaagccatgcagttgaaggtccccgtattggacgatgatggcttcgcggtgctgctg
gagcagggtcctgacgcggcacgagcggtagctgtcactccgcctgaggaggagtga
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