Sinomicrobium kalidii: LS482_20840
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Entry
LS482_20840 CDS
T07760
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sinh
Sinomicrobium kalidii
Pathway
sinh03030
DNA replication
sinh03410
Base excision repair
sinh03420
Nucleotide excision repair
sinh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sinh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LS482_20840 (ligA)
03410 Base excision repair
LS482_20840 (ligA)
03420 Nucleotide excision repair
LS482_20840 (ligA)
03430 Mismatch repair
LS482_20840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sinh03032
]
LS482_20840 (ligA)
03400 DNA repair and recombination proteins [BR:
sinh03400
]
LS482_20840 (ligA)
Enzymes [BR:
sinh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LS482_20840 (ligA)
DNA replication proteins [BR:
sinh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LS482_20840 (ligA)
DNA repair and recombination proteins [BR:
sinh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LS482_20840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LS482_20840 (ligA)
MMR (mismatch excision repair)
DNA ligase
LS482_20840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LS482_20840 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_ligase
Auto_anti-p27
Zn_ribbon_Top1
EcoRI
DUF72
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
UGU16111
LinkDB
All DBs
Position
5169380..5171383
Genome browser
AA seq
667 aa
AA seq
DB search
MNPVQKQIEDLREELTKHNYNYYVLDTPIISDYEFDMKLKELQELEAKHPEYHDPFSPTV
RVGGMITKNFATVAHDYRMYSLDNSYSKEELEDWEKRIQRILGDAKVEFVCELKYDGASI
NLTYENGELVRAVTRGDGFQGDDVTNNVKTIRSVPLRLKGDYPAKFDIRGEIILPRDGFA
KMNRERVEAGEDPYMNPRNTASGSLKLQDNSEVAKRPLDCLLYSIVGEKLNFSTQFEGLE
KARNWGFKVPPVAKLCNSTGEVLDFVNHWDTHRHELPYETDGVVVKVNSIAQQEELGYTA
KAPRWAMAYKFKAEQVTTTLNSITYQVGRTGAITPVANLEPVLLAGTTVKRASLHNADQI
EKLDVREGDTVFVEKGGEIIPKIIRVDFTRRKPDSEPTSYITHCPECGTELIRKEGEAQH
YCPDYYGCPPQITGRIQHFISRKAMDIEGLGSETVELLYKEGLIENYADLYLLKKEQIIP
LERMAEKSAENLVAGVEKSKEIPFERVLYALGIRFVGETVAKKLAKAYTSIDALRDATLE
DLVAIDEIGIKIAESVVEFFRNESNLEIVERLRSYGVQLEIAPEKLQNQSDKLKELTFVV
SGVFETLSRNELKKHIEDNGGKVASSISSRTSYVVAGDNMGPSKKDKAEKLGIPIISEHE
FLEMMAK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccgttcaaaaacaaatagaggacctcagggaagagcttacaaagcataattat
aactattacgtacttgacacgcccatcatatcagattacgaatttgatatgaaactaaag
gagttacaggaactggaggccaaacacccggaatatcacgatcctttttcgccaacagtc
cgtgtgggcgggatgatcaccaagaattttgcaacagtggcgcacgattaccgcatgtat
tcactggacaactcgtattccaaggaagaactggaagactgggaaaaacgcatacagcgg
attctcggagacgccaaagtagagtttgtatgcgaactgaagtacgacggtgcatccata
aacctcacttatgaaaacggggagctcgtccgggcagtgaccaggggcgatggttttcag
ggagatgatgttaccaataatgtaaagaccatacgatcggtgcctttacggttaaaaggg
gattatccggcaaaattcgatatccgcggggagatcatcctgccgcgtgacggttttgcc
aaaatgaaccgggaaagagtggaggccggggaagacccttacatgaacccgagaaacact
gcttcgggaagccttaaacttcaggacaattctgaagtggccaaaaggccgctggattgt
ttactgtacagcattgtgggtgaaaaactgaatttttccacacagtttgaaggactggag
aaagcccggaactggggatttaaagtgccgccggtagcaaaattatgcaacagcaccggg
gaagttctcgactttgtaaaccattgggatacacaccggcacgaactgccttatgaaacg
gatggagtggtagtaaaggtcaatagtattgcacagcaggaagaactggggtataccgca
aaagccccgcgatgggccatggcctataaattcaaggccgaacaggtgaccacaacactg
aacagcatcacttaccaggtaggaagaaccggcgccattaccccggtagccaacctggag
ccggtcctgcttgccgggactacggtaaaacgggcctcgttacacaatgccgaccagatt
gaaaaactggatgtgcgtgagggcgacacggtatttgtagaaaaaggcggggagatcatc
ccgaagatcatccgggtggatttcacccggagaaaaccggattccgagcctacgtcctac
atcacccattgccccgaatgcggtacggaactcatccggaaagaaggggaagcacaacat
tactgtcccgattattacggttgcccgccacagatcacggggcgcatccagcactttata
tcccggaaggccatggacatcgagggattaggaagcgaaacagtggaattgctgtacaag
gaagggcttattgaaaactacgccgacctgtacctgctgaaaaaagaacagatcatcccg
ctggaacgcatggctgaaaaaagcgcggaaaacctggtggccggggtagaaaaatcgaag
gaaatcccttttgaacgcgtattgtatgccctgggcatccgctttgtaggtgaaacagtt
gccaaaaaactagccaaagcctacacctccattgatgcacttcgtgatgccacccttgag
gaccttgtggccatagatgagattggtataaagatcgccgaaagcgtagtggaatttttc
cggaatgaaagtaacctggaaattgtggaacgactgcggtcttatggtgtacagcttgaa
attgccccggaaaaactacaaaaccaatccgataaactaaaagagctcacctttgtggtt
tccggcgtatttgagaccctgtcgagaaatgaactgaaaaaacatattgaggacaacggc
ggaaaagtagcttcttccatatcctccagaaccagctatgtggttgcaggagacaatatg
ggaccgagcaaaaaagataaggccgaaaagctggggattcccattatttccgaacacgag
ttcctggagatgatggcaaaataa
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