Sinorhizobium sp. CCBAU 05631: SS05631_c22380
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Entry
SS05631_c22380 CDS
T05069
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sino
Sinorhizobium sp. CCBAU 05631
Pathway
sino03030
DNA replication
sino03410
Base excision repair
sino03420
Nucleotide excision repair
sino03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sino00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SS05631_c22380
03410 Base excision repair
SS05631_c22380
03420 Nucleotide excision repair
SS05631_c22380
03430 Mismatch repair
SS05631_c22380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sino03032
]
SS05631_c22380
03400 DNA repair and recombination proteins [BR:
sino03400
]
SS05631_c22380
Enzymes [BR:
sino01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SS05631_c22380
DNA replication proteins [BR:
sino03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SS05631_c22380
DNA repair and recombination proteins [BR:
sino03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SS05631_c22380
NER (nucleotide excision repair)
GGR (global genome repair) factors
SS05631_c22380
MMR (mismatch excision repair)
DNA ligase
SS05631_c22380
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SS05631_c22380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
5_3_exonuc
Nlig-Ia
HHH_3
FdhE_central
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ASY57169
LinkDB
All DBs
Position
complement(2123853..2126006)
Genome browser
AA seq
717 aa
AA seq
DB search
MLNENKPVEQLTESEAAEELAFLAAELARHDALYHGQDAPEISDADYDALKRRNDLIEQR
FPALVREDSPSKKVGAAPSLTFQAVVHARPMLSLDNTFSDEDARDFVAGIYRFLGKLPDH
SIAFTAEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTGNIRTIRMIPQTLPADAPDV
VEVRGEVYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRKLRFFAYAW
GEISAMPADTQFGMVETFKAWGFPVNPLMQRFSSADELLEHYHHIERERPDLDYDIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPVTV
GGVVVTNATLHNEDYIRGLGNSGEPIREGRDIRIGDMVIVQRAGDVIPQIVDVVMDERAE
GAEPYRFPTTCPVCGSHAVRDINEKTGKVDAVRRCTGGFVCRAQAVEHLKHFVSRHAFDI
EGLGSKQIEFFFESEDPTLSIRTAPDIFTLERRQAASLTKLENIEGFGKVSVRKLYEAIN
ARRSIALHRFIYALGIRHVGETTAKLLARSYGTYEHFGAAMVEAGSLAGDAWNELNSIEG
IGEVVARAIVEFYKEPRNLKVVADLLEEVTPESAETRVATDSPVAGKTVVFTGSLEKMTR
DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKAHELGVQTMDEDEWLALIGG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgctgaacgagaacaagcccgtcgagcaactgaccgaaagcgaagcggcggaggaactt
gccttcctcgcggccgaactcgcccgccacgatgcgctctatcacgggcaggatgcgccg
gagatctcggacgcggattacgacgcgctgaagcgccgcaacgatctgatcgagcagcgc
tttccggcgctggtccgcgaggatagcccctcgaagaaggtcggcgcggcgccttcgctg
accttccaggcggtcgtccatgcccggccgatgctctcgctcgacaacaccttttccgat
gaggatgcgcgcgatttcgtggccggcatctaccgcttcctgggcaagctccccgaccat
tccatcgccttcaccgccgagccgaagatcgacgggctctccatgtcgctgcgctatgag
aaccgccggctggtgacggcagcgacgcgcggcgacggcacgacgggagagaacgtcacc
ggcaatatccgcacgatccgcatgatcccccagaccttgccggccgatgcgccggacgtc
gtcgaggtccgcggcgaggtctatatggcgaaatccgattttgccgccctcaatgccgag
atggcggcacagggcaggccgctctacgtcaatccgcgcaacacggcgtccgggtcgctg
cgccaactcgacgcgaaggtgacggcgagccgcaagctgcgcttcttcgcctatgcttgg
ggcgagatctcggcaatgccggcggatacgcaattcggcatggtcgagaccttcaaggcc
tggggcttcccggtcaatccgctgatgcagcgtttttcttctgcagacgaattgctggag
cactatcaccatatcgagcgcgagcggccggatctcgattatgatatcgacggcgtcgtc
tacaaggtcgatcgcctcgacctgcaggcacggctcggcttccgctcgcggagcccgcgc
tgggcgacggcgcacaagttcccggccgaacaggccttcacgcggctcaaggggatcgac
atccaggtcggccggaccggcgcattgaccccggtcgcgcggctggagccggtcaccgtc
ggaggcgtcgtcgtcaccaatgcgacgctccacaacgaggactatatccgcggcctcggc
aacagcggtgagccgatccgcgaggggcgcgacatccgcatcggcgacatggtgatcgtc
cagcgggcaggcgacgtcatcccgcagatcgtcgacgtggtgatggatgagcgggcagag
ggggcggagccctacaggtttccgaccacatgcccggtctgcggcagccatgcggtgcgc
gatatcaacgagaagaccggcaaggtggacgccgtgcgccgctgcaccggcggcttcgtc
tgccgggcgcaggcggtcgagcacctgaagcacttcgtctcgcgccacgctttcgatatc
gaggggctgggatcgaaacagatcgaattcttcttcgaaagcgaggatccgacgctgtcg
atccggaccgcgcccgacatcttcacgctggagcgccgtcaggcggcgtcgctcactaag
ctcgaaaacatagaaggtttcggcaaggtcagcgttcgcaagctctatgaggcgatcaac
gcccgccgttcgatcgccctgcatcgcttcatctacgcgctcggcatccgccatgtcggc
gagacgaccgccaagctgctcgcgcgctcttacggaacttacgagcacttcggcgccgca
atggtggaggcgggcagcctcgccggggatgcctggaatgagctcaacagcattgagggc
attggcgaagtcgtcgcgcgtgccatcgtcgagttctacaaggagccgcgcaacctgaaa
gtcgttgccgatcttctcgaagaggtgacgccggagagcgcggaaacacgggtggcgacg
gacagcccggtcgccggcaagaccgtggtcttcaccggttcgctcgaaaagatgacccgc
gacgaggcgaaggcgaaggccgaaagccttggcgctaaggtggcgggttccgtctcgaag
aagaccgacatcgtggtggccggtcccggcgccggctcgaagctcgataaggcccacgag
ctcggcgtccagacgatggacgaggacgagtggctggcattgatcggcgggtaa
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