Sinirhodobacter sp. HNIBRBA609: O5O51_07240
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Entry
O5O51_07240 CDS
T08716
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sinr
Sinirhodobacter sp. HNIBRBA609
Pathway
sinr03030
DNA replication
sinr03410
Base excision repair
sinr03420
Nucleotide excision repair
sinr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sinr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O5O51_07240 (ligA)
03410 Base excision repair
O5O51_07240 (ligA)
03420 Nucleotide excision repair
O5O51_07240 (ligA)
03430 Mismatch repair
O5O51_07240 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sinr03032
]
O5O51_07240 (ligA)
03400 DNA repair and recombination proteins [BR:
sinr03400
]
O5O51_07240 (ligA)
Enzymes [BR:
sinr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O5O51_07240 (ligA)
DNA replication proteins [BR:
sinr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O5O51_07240 (ligA)
DNA repair and recombination proteins [BR:
sinr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O5O51_07240 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O5O51_07240 (ligA)
MMR (mismatch excision repair)
DNA ligase
O5O51_07240 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O5O51_07240 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WBL34490
LinkDB
All DBs
Position
1479783..1481912
Genome browser
AA seq
709 aa
AA seq
DB search
MTVTDKIAVGALTRAEAEAELPGLIAAIEAANTAYHTHDAPEISDAEYDALKRRLTEIEA
RFPELARADSPTRQVGAPVAEGFGKVAHEVRMLSLENGFSDEDVLDFDARVKSYLGIAEA
EVLAYTAEPKIDGLSLSLRYEGGRLVQAATRGDGEVGENVTENARTITDIPQLLQVAPDV
LEVRGEVYMSHADFAALNARQAERGDKPFANPRNAAAGSLRQLDARITAARPLRFFAYAW
GALSEPLALTQINAIARLKALGFQTNPLTELCNGPQDMLAHYRGIEAQRASLGYDIDGVV
YKVNDLGLQRRLGFRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLSPVTV
GGVVVSNATLHNEDYIAGRDSKGQEIRGGKDIREGDWVQVYRAGDVIPKVADVDLSRRPA
DAVPYVFPQHCPECGSDAIREEGDAVRRCTGGMICPAQAVEKLKHFVSRSAFDIEGLGAK
QVEAFYEDDWIREPADIFQLQRNYGPNSLRQLRKREGWGEKSADKLFAAIDERRRIPLAR
LIFALGVRHVGETSAALLANHYGSWAEFEAAMTGAQIGEGAEWDELMSIDGVGTTLATSV
VSSFHQEAERALIDRLITELTVEDAVRHDTSGSPIAGQTVVFTGTLERMTRAEAKARAEL
MGAKVAGSVSAKTDLLVAGPGAGSKAKKAAELGIKVIDEDEWLTLVGAS
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgacggacaagattgcagttggtgcgctgacccgtgccgaggcagaggccgaa
ctgccggggctgatcgctgcgatcgaggcggccaataccgcttaccatacgcacgatgcg
cccgagatttctgacgccgaatatgatgcgctcaagcggcgtttgaccgagattgaggcg
cgtttccccgagctggcgcgcgccgacagcccgacccgtcaagtgggtgcgcctgtcgcc
gagggcttcggcaaggtcgcgcatgaggttcggatgctgagcctcgaaaacggcttttcc
gatgaagacgtgctcgactttgatgcccgcgtgaaatcctaccttggcatcgccgaggcc
gaggtgctggcttatacggcagagcccaagatcgacggtctgtcgctgtcgctgcgctat
gaaggcgggcggctggtgcaggcggcgacgcgcggcgatggtgaggtcggcgagaacgtc
accgagaatgcgcgcacgatcaccgatatcccgcaactcttgcaggtcgcgcccgatgtg
cttgaggtgcgcggcgaggtctacatgagccacgccgatttcgcggcgctcaacgcccgg
caggccgagcggggcgataagccgttcgccaacccgcgcaacgccgccgccggatcccta
cgccagcttgacgcgcggatcacggccgcgcggccgctgcggttctttgcctatgcctgg
ggtgccttgtccgaaccgctggcgttgacgcagatcaacgcgattgcacgcctgaaggca
ttgggttttcagaccaacccgctgaccgagctttgcaacgggccgcaggacatgctggcg
cattaccgtgggatcgaggcgcagcgggccagcttgggctatgacatcgacggggtcgtc
tacaaggtgaacgatctgggcctgcaacgccggctcgggttccgctcgaccacgccgcgt
tgggccattgcgcataaattccccgccgagctggcctggacccggcttgagaagatcgag
attcaggtcgggcgcacgggcgcgctcagcccggttgcgcggctcagccccgtgactgtg
ggcggcgttgttgtttcgaacgcgaccctgcacaacgaggattacatcgccggacgtgac
tcgaaggggcaagagatccgcggcggcaaggatatccgcgagggggactgggtacaggtt
taccgcgcgggcgacgtgattcccaaggtcgccgatgtggacctgtcgcgccgcccggcg
gatgcggtgccctatgtcttcccgcagcactgtccggaatgcggatccgacgcgatccgg
gaagagggcgatgccgtgcgccgctgcaccggcggcatgatttgcccggcgcaagccgtg
gaaaaactgaaacatttcgtctcgcgttctgcgttcgacatcgagggcctgggggcaaag
caggttgaggcgttctacgaagacgattggatccgcgaacccgccgatatcttccagctg
caacgcaactatggcccgaacagcctgcgtcagctgcgcaagcgcgaggggtggggtgag
aaatccgccgacaagctctttgccgcgatcgacgagcggcggcgcatcccgctggcccgt
ctgattttcgcgcttggcgttcgccatgtcggcgaaaccagcgccgcgctgctggccaat
cactacggaagctgggccgagttcgaggccgcgatgaccggcgcgcagatcggcgaggga
gccgagtgggatgagttgatgtccatcgacggggtcggcacgacgcttgcaacctcagtc
gtcagcagcttccatcaggaggctgagcgcgccctgattgaccgtctgatcaccgaactg
acggtagaggatgcggtgcgccacgatacctcgggcagcccgattgcggggcagactgtt
gtctttaccgggacgctcgaacgcatgacccgcgccgaggccaaggcgcgggccgagctg
atgggcgccaaggtcgcaggctcggtatcggccaagaccgatctgctggtggcggggccg
ggggcgggctcaaaggccaagaaagcggccgaactgggcatcaaggtgattgatgaagac
gaatggctgacgctggtgggggcctcatga
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