Streptococcus iners: PW252_07670
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Entry
PW252_07670 CDS
T10964
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sins Streptococcus iners
Pathway
sins03030
DNA replication
sins03410
Base excision repair
sins03420
Nucleotide excision repair
sins03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sins00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PW252_07670 (ligA)
03410 Base excision repair
PW252_07670 (ligA)
03420 Nucleotide excision repair
PW252_07670 (ligA)
03430 Mismatch repair
PW252_07670 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sins03032
]
PW252_07670 (ligA)
03400 DNA repair and recombination proteins [BR:
sins03400
]
PW252_07670 (ligA)
Enzymes [BR:
sins01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PW252_07670 (ligA)
DNA replication proteins [BR:
sins03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PW252_07670 (ligA)
DNA repair and recombination proteins [BR:
sins03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PW252_07670 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PW252_07670 (ligA)
MMR (mismatch excision repair)
DNA ligase
PW252_07670 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PW252_07670 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
UPF0758_N
Bep_C_terminal
SLX1_C
Motif
Other DBs
NCBI-ProteinID:
WNY50449
UniProt:
A0AA97A366
LinkDB
All DBs
Position
complement(1577785..1579743)
Genome browser
AA seq
652 aa
AA seq
DB search
MEKRISELVDLLNKYADEYYRTDKPSVSDSEYDKLYRELVELETAHPELVLPNSPTHRVG
GKILDGFEKYSHVYPLFSLQDAFSREELDAFDQRVRKEFPQATYICELKIDGLSISLTYE
AGNLVVGATRGDGSVGENITENLKRVADIPLTLPQAVDITVRGECYMPKASFDRVNQQRQ
EAGEAEFANPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSEATSQSQVLEKLDSLGFV
TNHDYQLADSMDDVWAFIEKMAERREDLPYEIDGIVIKVNDLAIQEELGFTVKAPRWAVA
YKFPAEEKEAQILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLKVVDKYRSEQEVMPVPSQCPSCQSDLQHYEDEVALRCINPICPS
QLMSKLEHFASRDAMNIAGLGSSIVEKLFGAGLVHDVADIYKLTVDDLLTLEGFKEKSAD
KLYQAIQTSKGNSAERLLFGLGIRHVGSKASKILLENFGDLEALAQASQEEIASLEGLGQ
VIAKSLTSFFASSGAQQLLAELKENAVNLAYLGQVADENAALSGLTVVLTGKLERMKRGE
AKAKLEALGAKVAGSVSKKTNLVVAGADAGSKLAKAQELGIEIKDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaagaatatcagaattagtagacttacttaacaaatatgccgacgaatactat
cgcacagacaaaccaagcgtgtctgattccgaatacgacaaactctatcgagaattggtg
gaactggaaacagcccatccagaattggttttgccaaatagtcctacccatcgtgttggt
ggcaaaattttagacggctttgaaaaatacagccatgtctatcctctttttagcttgcag
gatgccttttcgcgtgaagaattagatgcctttgaccaacgtgttcgcaaggaatttcca
caagcgacctacatctgcgaactcaagattgacggcctgtccatttccctgacctatgaa
gcaggcaatctagtagtaggtgcgacacgtggtgacggtagtgtcggtgagaatatcacg
gaaaacctcaagcgtgtggcagatattcccttgaccttacctcaagcagttgatattact
gtccgtggcgagtgctatatgcccaaagcctcttttgaccgcgtcaaccaacaacgtcag
gaggcaggagaggctgagtttgccaatccacgtaatgcagcggcggggacccttcgccag
ctggatacgggagttgtggcccagcgtggccttgctactttcctctaccaagaggctagt
ccgtctgaagcgaccagccagtcacaagtgctggaaaagctggatagtctaggctttgtg
accaaccacgactaccagttggccgacagcatggacgatgtttgggcttttattgaaaaa
atggcagagcggcgagaagatttgccctatgaaatcgacggtatcgtcattaaggtcaat
gacctagctatccaagaggaattaggatttactgttaaggcccctcgttgggcagtggcc
tacaagtttccagctgaggaaaaagaagcccaaatcctgtctgttgattggacggttggt
agaacaggtgtcgtcactcccacagccaacctcagccctgttcagttagctggcacgact
gttagccgtgccactctgcacaatgtggattacattgcagaaaaagacattcgtattggt
gatacggtcattgtttacaaggcaggggacattatccctgctgttctgaaagtggtggac
aagtatcggtctgagcaggaagtgatgcctgttccaagccagtgtccgtcttgtcagagc
gacttgcagcattacgaagatgaagtggcccttcgttgtatcaatcccatttgcccaagt
cagttgatgagtaagttggagcattttgccagccgtgatgccatgaatattgcaggtctg
ggatcttctattgtagaaaaactctttggagccggcttggtacacgatgttgctgatatt
tataaattaactgttgatgacctattgaccttggaaggcttcaaagaaaaatcagctgac
aagctctatcaggccattcagacatcaaaaggaaattcagcagaacggctcttgttcggt
ttgggtattcgccatgtcggcagcaaggccagcaagattttgctagaaaactttggcgac
ttggaagccctagctcaagccagtcaggaggaaattgcttccctagaaggattgggtcag
gtaatagccaagtccttgaccagcttctttgccagctcaggtgcccagcaacttttagct
gaacttaaggaaaatgccgtaaacttggcttatctgggacaggtagcggatgaaaatgct
gccttgtctggacttacggtcgtattaactggtaagttggaacggatgaagcggggcgag
gccaaagctaagctagaagctttgggtgccaaggtagcaggctctgtttccaagaagacc
aacctagttgtcgcaggtgctgacgcaggaagcaagttggccaaggcccaagagttagga
attgaaataaaagatgaggcttggttagaaagcctttaa
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integrated database retrieval system
