Streptococcus ilei I-P16: N597_05385
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Entry
N597_05385 CDS
T02880
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sip
Streptococcus ilei I-P16
Pathway
sip03030
DNA replication
sip03410
Base excision repair
sip03420
Nucleotide excision repair
sip03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N597_05385
03410 Base excision repair
N597_05385
03420 Nucleotide excision repair
N597_05385
03430 Mismatch repair
N597_05385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sip03032
]
N597_05385
03400 DNA repair and recombination proteins [BR:
sip03400
]
N597_05385
Enzymes [BR:
sip01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N597_05385
DNA replication proteins [BR:
sip03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N597_05385
DNA repair and recombination proteins [BR:
sip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N597_05385
NER (nucleotide excision repair)
GGR (global genome repair) factors
N597_05385
MMR (mismatch excision repair)
DNA ligase
N597_05385
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N597_05385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Relaxase_C
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
AGY38391
LinkDB
All DBs
Position
complement(1047163..1049097)
Genome browser
AA seq
644 aa
AA seq
DB search
MTLLNHYAEEYYTKDAPSVSDYEYDQLYRELVALEEAHPELVQPNSPTHRVGGTILKGFE
KYQHAYPLYSLQDAFSYEELVAFDQRVRKEFPAVTYVCELKIDGLSISLSYVDGVLETGA
TRGDGSIGENITENLKRVRDIPLVLPEPLTLTVRGECYMPRASFDAVNLSRQENGEAEFA
NPRNAAAGTLRQLDTKIVAERKLATFLYQEASPTDQTSQEKVLAKLDRLGFVVNPHHKTA
TSIEQVWDYIQEVAAMRDQLPYDIDGVVIKVNDLAVQEELGFTVKAPKWAVAYKFPAEEK
EAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKDDTVIVYKA
GDIIPAVLRVVMDKRVSEEKLEIPSHCPSCQSELLHFEDEVALRCINPRCPAQIKEGLAH
FASRDAMNITGLGPAVVEKLFAKELVQDVAGIYRLTVEDLLQLEGFKEKSAQKLVDAIQA
SKGNSAEKLLFGLGIRHVGSKASQLLLQEFHSIPALAEAEVETIAAIDSLGMVVAESLQR
YFAQEGSRLLLEELKDAGVNLEYLGQKVAADAPLSGKTVVLTGKLERLTRSEAKAKLEAL
GAKVTGSVSKKTDLLVAGSDAGSKLSKAQELSIEIQDEAWLESL
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
gtgacactcctgaatcactatgcagaagaatattatacaaaagatgctccgtccgtatcg
gattatgagtacgaccaactttatcgggaattagtcgccttagaggaagcccatccggag
ttggtccagcccaatagcccaacccatcgggtcggaggaactattcttaaagggtttgaa
aaataccagcatgcttacccgctatacagcttgcaggacgccttttcttatgaagaatta
gtggcctttgatcaacgggttcgcaaagaatttcctgctgtcacctatgtatgtgaatta
aaaattgacggcctgtctatttcactatcttatgtcgatggagttcttgaaacgggtgct
acacgtggggatgggagcattggagaaaatatcacagagaacctcaagcgagttcgcgat
attcctctagtcttgccagaacctcttacattaacagttcgcggagaatgttatatgccc
cgtgcatcttttgatgctgtcaacttgtctcgccaagaaaatggggaagcagagtttgcg
aatcctcgaaatgcggcagccggtactcttagacagttggatacaaagattgttgcggag
cgaaaactcgcgaccttcctctatcaagaagctagtccaactgaccaaacgagtcaagag
aaggtgttagccaagttagatcgactcggttttgtcgtcaatccgcatcacaagacagcg
actagtatcgagcaagtctgggactatattcaagaagtggcagccatgcgtgaccagctt
ccttatgatatcgatggggtcgtgataaaagtgaatgacctggctgtccaagaagaactt
ggctttactgtcaaagctcccaaatgggcagtggcttacaagttcccagctgaggagaag
gaagcaaaactcttgtcagttgattggactgttggtcggacaggagtggtgacaccaact
gctaatttgactcccgttcaactagcagggacgactgtcagtcgggctactctccataat
gtagattacattgctgagaaagatattcgcaaagacgataccgtcattgtctataaagca
ggggatattattccagctgttctacgggttgttatggataagcgcgtatcagaagaaaaa
ttagagattcccagtcactgtccaagttgtcagagtgagctccttcattttgaggatgaa
gtggccttgcgttgtatcaacccccgttgtcctgctcaaataaaggaagggctcgctcac
tttgccagccgggatgccatgaatataacagggttggggccagctgtggtggaaaaactg
tttgccaaagaactggtacaggatgtggcaggtatttaccggctgacggttgaggatctt
ttacaattagaaggttttaaagaaaaatctgcccagaagttagtagatgctattcaagca
tctaaggggaattctgctgaaaaactattgtttggactgggaattcgtcatgtaggaagt
aaggccagccagctcttgctccaagagtttcattccattccagctttagcagaagcagag
gttgaaacgattgcagcgatagacagtttaggaatggtcgttgcagaaagtctccagcgt
tattttgctcaggaaggctctcggcttcttttagaagagcttaaggatgctggggtaaac
ttagagtacctaggacaaaaggttgcagcagacgcaccattgtccggtaaaacagtcgtc
ttaacaggtaaactggaacgtctgacacgttctgaagctaaggctaaattagaagcctta
ggggctaaagtcacaggctccgtgtccaagaaaactgacctgttggttgcaggtagcgat
gcgggaagtaaattaagcaaagcgcaggaattatcgattgaaatacaggatgaagcctgg
cttgagagtttatag
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