Ruegeria sp. TM1040: TM1040_1398 Help Entry TM1040_1398       CDS       T00359                                  Name (GenBank) DNA ligase NAD-dependent   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism sit  Ruegeria sp. TM1040 Pathway sit03030   DNA replication sit03410   Base excision repair sit03420   Nucleotide excision repair sit03430   Mismatch repair Brite KEGG Orthology (KO) [BR:sit00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     TM1040_1398    03410 Base excision repair     TM1040_1398    03420 Nucleotide excision repair     TM1040_1398    03430 Mismatch repair     TM1040_1398  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:sit03032]     TM1040_1398    03400 DNA repair and recombination proteins [BR:sit03400]     TM1040_1398 Enzymes [BR:sit01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      TM1040_1398 DNA replication proteins [BR:sit03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      TM1040_1398 DNA repair and recombination proteins [BR:sit03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      TM1040_1398    NER (nucleotide excision repair)     GGR (global genome repair) factors      TM1040_1398    MMR (mismatch excision repair)     DNA ligase      TM1040_1398   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       TM1040_1398 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden OB_DNA_ligase BRCT HHH_2 DNA_ligase_ZBD HHH_5 PTCB-BRCT Motif Other DBs NCBI-ProteinID:  ABF64131 RoseoBase:  TM1040_1398 UniProt:  Q1GGT5 LinkDB All DBs Position complement(1490751..1492970) Genome browser AA seq 739 aa AA seqDB search MDEADARAEFEALQTKIEKADHDYHQKDAPTLSDADYDRLKRRYLALADAFPILAKDGTR VASVGAPAASGFGKVTHAQRMMSLGNAFEDQDVEDFAVGLRRYLGLSSEAPLAFTAEPKI DGLSLSLRYEAGKLVQAATRGDGAVGENVTENARTISDIPQEISGAPEVLEVRGEVYMSH ADFEALNARHAETGGKIFANPRNAAAGSLRQLDAEITRARPLRFFAYSWGELSEPLAETQ IDAIERLASLGFQTNPLTRCCEQISELLAHYHAIEEQRADLGYDIDGVVYKVNDLSLQER LGFRSTTPRWAIAHKFPAELAWTHLEGIDIQVGRTGALSPVARLHPVTVGGVVVSNATLH NEDYIAGLDSKGAPIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSRRPEGTERYAFPTRC PRCDSPAVREEGDAVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFHSDGWV KEPADIFELQQRYGSGLQQLKNREGWGEKSASALFAAIEDKRRIEFARLIFGLGIRHVGE VAAKDLALHFRTWSALAEAADLARAAALAHRAADEAEIVERQEAQASARRAKISEARNAA VATCAVAPDSQAAWDDLISVDGLGPTVALSLSDAFANPEERAAFDRLIAHLEIIEPDAPA DDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDILVAGPGAGSKAAKAA ELGIQTLDEDGWLDLIGQA NT seq 2220 nt NT seq  +upstreamnt  +downstreamnt atggatgaggccgacgcgcgcgctgagtttgaggcgctgcagaccaagatcgaaaaagcc gatcacgactatcaccaaaaagacgcgcccactctgtcggatgcggattacgatcgcctc aagcgtcgctatctggcccttgcagacgcctttcccatcttggccaaagacggcacccgt gtagcgagcgttggcgcgccggccgcctctggctttggcaaggtcacccatgcgcaacgt atgatgtccctcggaaatgcgtttgaagatcaggatgttgaggattttgctgtcgggttg cgccgctatctggggctctcctccgaggctccgctcgccttcaccgcagagccgaaaatt gacgggctttcgctttccctgcgctatgaggcgggcaaacttgtgcaagctgcaacccgc ggcgatggcgcggtgggggaaaacgtcaccgaaaacgcccgcaccatcagcgatattccg caagaaatctctggcgcgcccgaggtcctggaagtgcgtggcgaagtctacatgagccac gcagatttcgaggctctgaatgcgcgtcatgccgagaccggcggcaagatatttgccaac ccgcgcaatgcggcggcgggctcgctgcgccagctcgatgctgaaatcacccgcgcccga cctttgcggttctttgcctatagctggggagagctgtctgaacctctcgcagaaacgcaa attgacgcgatcgagagactggcgtcccttggctttcagaccaatccgctgacacgctgc tgcgagcagatttccgagctgctcgcgcattatcacgccatcgaggagcagcgcgcggat ctcggctatgacatagacggagttgtttacaaggtgaacgatctgtccttgcaagagcgt cttggctttcggtcaacgacgccacgttgggccattgcgcataagtttccggccgagctg gcctggacccaccttgaggggatcgacattcaggttggacgcaccggcgccctgagcccg gttgcgcgtctgcatccggtgaccgtgggcggtgtggttgtctccaacgccacgttgcac aacgaagactatattgcgggacttgattccaaaggcgctccgatccggggcggcaaggac atccgcgtcggggactgggtgcagatctaccgcgcgggcgatgtgatcccaaaggtcgcc gacgtcgatctgagccgacgccccgagggcacggagcgttatgcgttccccacgcgctgt ccccgatgcgacagccccgcggtgcgcgaagaaggtgatgctgtgcgacgttgcagcggc gggttgatttgcccggcgcaggcggttgagaaactcaagcattttgtctcgcgcgcggct tttgacatcgaagggctgggcgccaaacaggtggaacaattccacagcgatggatgggtg aaggaacccgccgatatctttgagctccaacagagatatggctctggtttgcagcagttg aaaaaccgcgaaggctggggggagaaatctgcgtctgctctgtttgcagccatcgaggac aagcggcgaattgagtttgcccggctcatttttggcctcgggatccgccatgtgggagaa gttgccgccaaggaccttgccctgcatttccggacctggagcgccctggcggaggccgcg gatctcgcgcgcgcagcggcgttggcgcaccgggctgcggatgaagccgagattgttgaa cggcaggaggcacaagccagtgcgcgccgtgcaaaaatctctgaggcccgaaatgccgcg gttgcaacctgtgcagttgcgccggactcgcaggcggcgtgggatgatctcatcagtgtg gatgggcttggcccaaccgtggctttgtctttgtcggatgcctttgccaaccccgaagaa cgcgccgcttttgatcgtctgatcgcgcatctagagattattgaaccggatgccccggca gatgacagccccgttgcgggcaagaccgtcgtctttaccggcacgctcgaaaaaatgacc cgcgccgaggcaaaggcgcgcgccgaggcgcttggggccaaagtgtctgggtcggtgtca aagaaaaccgatattcttgtggccggaccgggcgcggggtcgaaggccgccaaggctgca gagctcggcattcagacattggatgaggacggatggctggacttgatcgggcaggcatag

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