KEGG   Ruegeria sp. TM1040: TM1040_3794
Entry
TM1040_3794       CDS       T00359                                 
Symbol
virD4
Name
(GenBank) Protein virD4
  KO
K03205  type IV secretion system protein VirD4 [EC:7.4.2.8]
Organism
sit  Ruegeria sp. TM1040
Pathway
sit03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:sit00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    TM1040_3794 (virD4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:sit02044]
    TM1040_3794 (virD4)
Enzymes [BR:sit01000]
 7. Translocases
  7.4  Catalysing the translocation of amino acids and peptides
   7.4.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.4.2.8  protein-secreting ATPase
     TM1040_3794 (virD4)
Secretion system [BR:sit02044]
 Type IV secretion system
  Conjugal DNA-protein transfer (VirB/D) protein
   TM1040_3794 (virD4)
SSDB
Motif
Pfam: T4SS-DNA_transf TraG-D_C TrwB_AAD_bind DEAD
Other DBs
NCBI-ProteinID: ABF61926
RoseoBase: TM1040_3794
UniProt: Q1GN40
LinkDB
Position
unnamed:43437..45443
AA seq 668 aa
MSDAMGKARIATGILLVTLVTGAMGYTIASAVLSHQDLGFGAEIDFAYIAQNYLAILDRR
PEDAQLIHLIIGSFAAAGLMLSLALSGSALTRFGQTHWQSAREMKANGFFGAPGTGFILG
KLGTPKSRAKFVCSKVFPHALIVAPTGRGKTTGFVIPNLLTWQGSAVTLDVKGECFEATA
RHRAAQGDKVYRFAPTDWEGKRTHRYNPLLRIYQLKDPARQQMELQLLATLFLQSDNDRV
QGLLKGGIDLFVAAGLLAFQRKRPTLGEIYRIAASGGNKQKEYFARGHEVDNRAAKLIFT
RLASTNNDTLTSYVSLLMTSGLDQWQNPAIDEATAVSDFDFRTIRKKPFSVYLVVQPLMV
KPLAPLIRLFFSDLLSAMQEKDPGPDEPWPVMIMLDEFNRLGKMPIVVESIETLRSYSGH
LAVVTQTIPALDEIYGENTRRALQGNAGVKLYLTPSDEKTVEELSKAVGKTTKTVVTRSQ
SIGKNPFEGRSQSTRTEESSLLPEDEARRLPLDEIVMVIDAQMPVRAKRIQYFDDRLFKT
IHDAQTGDLPFPEPGGAQGKLPLTMRAMPMAPPPDESSGPEADGKAARQTADGQSSGPSG
AVPKKTAPIVQAVIAEAQRQMEMDLEGAVADAEAARIVDEAQMRSAVDGLNDMEAMLQED
RGQKLVGR
NT seq 2007 nt   +upstreamnt  +downstreamnt
ttgagcgacgccatgggaaaagcgcggatcgcaactgggatcttgctcgtcacgctggtg
accggggccatgggatataccatcgcctcggcggttctgagccaccaggatctcggcttc
ggggcggagatcgactttgcttatatcgcgcagaactatctggcgatcctcgatcgccgc
ccggaggacgcgcaactcatccacctgatcatcggcagcttcgccgctgccggcctgatg
ctgagccttgccctgtcgggctcggccctcacacgctttggccagacccattggcagtct
gcgcgcgagatgaaggccaacgggtttttcggcgctcccgggaccgggttcatccttggt
aagctcgggacaccaaaatcccgcgcgaaattcgtctgctcaaaagtcttcccgcacgcg
ctgatcgtggcccccaccgggcgcggcaagaccacgggcttcgtcattccaaacttgctg
acctggcaaggctccgccgtgacgctcgatgtgaagggggaatgtttcgaggccacggcg
cgccaccgcgccgcccagggcgacaaggtctatcgctttgctccgacggattgggagggc
aagcgcacgcatcgctacaacccgctcttgcgcatctatcaactgaaagatcccgcgcgc
caacagatggagttgcaacttcttgctacgcttttcttacagagcgacaacgaccgggtg
cagggcctcctcaaaggcgggattgatctctttgtggcagcaggcctgctggcgttccag
cgcaagcgtccgaccttgggcgagatctaccgcatcgcggcctcgggcgggaacaagcag
aaggagtatttcgcgcggggccatgaagttgacaacagggcggccaagctgatcttcacg
cggctggcgtccaccaacaacgatactctgacgtcttatgtttcactcctgatgacctca
gggcttgatcaatggcagaaccccgcgatcgatgaggcgacggcagtgtcggatttcgac
ttccggacaatccgcaaaaagcccttctctgtttatctcgtagtccagccgctgatggtc
aaaccacttgcccctctgatccggctctttttctccgatctcctttcggcgatgcaggaa
aaggaccctgggccggatgagccgtggcctgtgatgatcatgctcgatgaattcaaccgt
cttggcaaaatgcctatcgtggtcgaaagcatcgagaccctccgcagctatagcggtcat
ctggccgtcgtcacccagacgattcccgccctcgatgaaatctatggtgagaatacccgc
cgagccctgcagggcaacgcaggggtaaagctctacctaaccccgtctgacgaaaaaacc
gtcgaggagctgagtaaggcggtcggcaagaccacaaagaccgtggtcacgcggtcgcaa
tccatcggcaagaaccccttcgagggccgcagccaatccacacggaccgaagaaagctcc
ttgcttcctgaagatgaagcacgccgcctgccactcgacgagatcgtcatggtcatcgat
gcccaaatgccggtccgggcgaagcgaatccagtattttgacgaccgcctgttcaaaacg
atccatgatgcacagacgggagacttgccgtttccagagccggggggcgcgcagggtaag
ctgccacttactatgcgcgcgatgccgatggcaccgccaccggacgagtcaagcggaccc
gaggccgacggtaaggccgcacgccagactgctgacggccaatcgtctgggccatctggc
gctgttcccaagaagaccgcgcccatcgttcaagctgtgatcgccgaggcgcagcgacag
atggaaatggatcttgaaggtgcagttgctgacgctgaggccgcgcgcatcgttgatgag
gcccagatgcgctccgctgtcgatggtttgaacgacatggaagctatgctgcaggaggat
cgcggtcaaaagctggttggtcggtag

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