Setaria italica (foxtail millet): 101776459
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Entry
101776459 CDS
T02818
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
101776459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101776459
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
101776459
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
101776459
NCBI-ProteinID:
XP_004981451
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All DBs
Position
IX:complement(3330573..3339869)
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AA seq
1024 aa
AA seq
DB search
MGVPAFYRWLADRYPLTVSDAEEEEPVELEPGAFVPVDLRRPNPNGIEFDNLYLDMNGII
HPCFHPEGRPAPTTYDEVFKSIFDYIDHLFGLVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKDAADAAAEEERLRKEFEAEGRTLAQKEKSEAIDSNVITPGTQFMFVLSTALQYYIQ
LRLNHTLGWQSVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
ALATHEVHFSILREVISMPGQQEKCFLCGQVGHLAAECRGPSQVDSAVELPPIHKKKYQF
LHIWVLREYLAKDLEIVDAPFKINFERLIDDFVFMCFFVGNDFLPHMPTLEIREGAINLL
MSIYRAEFISMGGYLTDGGEVVLDRVEHFIQSVAFNEEQIFQKRARIQQARENNEERNKI
QRESTEENQYVDKVCFSHKISEYVCSVMSLMIVSMKIVCCPSFSFYLQVKLGEPGYRERY
YAEKFKEEAESKPIDQVRRDVVQKYVEGLCWVMRYYYQGVCSWQWFYPYHYAPFASDLKD
LAELEITFFLGQPFKPFDQLMGTLPAASSNALPKYYGDLMTDPNSPLKSFYPKDFEIDMN
GKRFAWQGVAKLPFIDETRLLAETRKLEDTLTEEEKFRNTTMFDIIYVRETHPLTAQIAF
LYRMYNHLPRTDPYVIPIDPAASGGMNGFLCLSERNWYSITVTSPVKCFNGIAQNRVLNA
TYLNPQYHKHIPEPPVGVIVPGKILKPSDFKPFPVLWHEDNSRRQARERPQVSGALSGSL
LGQAAHRLVKNSLQIKSGSAAGLLEMPYRGAPYGPGNRPRPAGPLGYERGFVDNPHHAHT
SRSVPNSHPQFFGDAQANRQPMRILERPNSGSHEAGIHASMSKLTIHEGPRLHQNNRMQN
SGYWPNQPHPNHYAGPPPQQPMQNISFTPQRPFQTGGFPQQRPVNGVPPPLPPSNWIGKQ
PTGGPPGVPAKHDPRTAPDRQLKQDNPRSQQDKRQQATKVYRVKTQATNGNGLSESGKQE
EPAA
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttctaccggtggctggcggaccgctacccgctgacggtgtcggac
gcggaggaggaggagcccgtggagctcgagcccggcgccttcgtccccgtcgacctccgc
cgccccaaccccaacggcatcgagtttgacaacctctacctcgacatgaatggcatcatt
cacccctgcttccaccccgaaggccggccggcgcccaccacctatgacgaggtgttcaag
tcgatttttgattacatcgaccacctcttcggcctcgtccgccccaggaagctcctctac
atggccattgatggtgttgctccaagggcaaaaatgaatcagcagaggtccaggcgattc
cgggctgcaaaggacgcagctgatgcggcagccgaggaggagaggctgaggaaggaattt
gaggcagagggtaggactctagcccagaaggagaagtcagaggcaatcgactcgaatgtc
attactcccgggacgcagttcatgtttgtactatctacggcgcttcagtactacatacaa
ctgagattgaatcatacacttggatggcagtctgtcaaggtaatattgtctgattccaat
gtccctggtgagggagagcacaaaattatgtcatacatccgcctgcagcgcaatcttcct
ggctttgatcccaatacacgtcattgcttatatggcctggatgctgatttgattatgctt
gctctggcaactcacgaggtccacttctcaattttaagagaggtgatctccatgccaggg
caacaagaaaaatgtttcctgtgcggtcaagttgggcatttggctgctgaatgcagaggc
cctagccaggttgatagtgctgtggagctacctcctatccataaaaagaaataccagttt
cttcacatatgggtgttgcgtgaatacctggcaaaggatttggaaattgtagatgctcca
ttcaagataaactttgaacggcttatcgatgattttgtgtttatgtgtttctttgttggc
aacgactttctgcctcacatgccgactttggaaattcgtgagggtgccattaatcttctg
atgagtatctacagggcagagttcatatcaatgggtggttacctgaccgatgggggcgag
gttgtattggaccgtgtggaacatttcattcagtccgttgctttcaatgaagaacaaatt
ttccagaaacgtgcacgcattcaacaggcacgcgagaacaatgaagagagaaacaaaata
cagagagaaagtaccgaggagaatcaatatgtggacaaggtctgtttttcccataaaatt
tctgaatatgtttgttcagtaatgtctctgatgattgtaagtatgaaaattgtttgctgt
ccctcattctctttctaccttcaggtcaagttaggagagccaggatacagggagcggtac
tatgctgaaaagtttaaagaagaggcagaatcaaaacccattgatcaagttcggagagat
gtcgtccagaaatatgtggaaggtctttgctgggttatgagatactactatcaaggtgtt
tgttcatggcagtggttctatccatatcattatgcgccttttgcatctgacctaaaagac
ttggctgaattggagattacctttttcttgggtcaacctttcaagccatttgatcagctt
atgggaacactaccagctgccagctccaatgcactgccaaagtactatggggatttaatg
actgatccaaattcacctttgaagtctttctatcccaaagattttgagatagacatgaat
ggaaaacgttttgcatggcagggtgttgcaaagttaccttttattgatgaaacacgtctg
cttgccgaaacaagaaaactagaagatacattgacagaagaagagaaattcaggaacacg
acaatgtttgacataatatatgttcgggaaactcatccattgactgctcagattgcgttc
ctgtatcggatgtacaaccatctaccaagaacagatccttatgttattcccattgatcct
gctgctagtggtggaatgaatgggttcctttgtttatctgaaaggaactggtatagcatc
actgtaacatctccagttaagtgcttcaacggcattgcccaaaacagagttttgaatgct
acgtatcttaatcctcagtatcacaaacacatcccggagcccccagtgggggtcatcgta
cctgggaagatattgaagcctagtgatttcaaaccctttcctgtgttgtggcatgaagat
aatagtcgtcggcaagcaagagaaaggcctcaggtttctggagctttgtcaggttctctc
ttaggacaagctgcacaccgtctggtgaaaaactcccttcagatcaaatctggtagcgct
gctgggctacttgagatgccatatagaggtgcaccctatggccctggaaacagaccaagg
cctgctggaccattgggatatgagaggggttttgtggacaacccacaccatgcacacacg
tccagaagtgtcccgaactctcatcctcagttctttggtgatgctcaagctaacagacag
cctatgcggatactggaacgtccaaactccggaagccatgaagctggtatccatgcatca
atgtcaaaactgacaatccatgaagggccaaggcttcatcagaataacaggatgcagaat
tccgggtactggcccaaccaaccacatcctaatcactatgctggacccccacctcagcag
cctatgcagaatatcagtttcacacctcagcggcctttccaaactggaggattcccgcag
cagcgaccagtaaatggggttccaccaccattacctcccagtaactggattggcaagcaa
ccaactggaggccccccaggtgttcctgcaaagcatgatccaaggacagctccggataga
cagcttaagcaggataacccaagatcgcaacaggataagagacaacaggctaccaaggta
taccgtgtcaaaacccaagctactaatggtaacggtttgtcagagtcaggtaaacaggaa
gaacccgcagcataa
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integrated database retrieval system
