Setaria italica (foxtail millet): 101777938
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Entry
101777938 CDS
T02818
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
101777938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101777938
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
101777938
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
101777938
NCBI-ProteinID:
XP_012703196
UniProt:
K3Y598
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Position
VII:complement(34850626..34855647)
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AA seq
800 aa
AA seq
DB search
MGIPSFYKWLVTRYPSIVSPAKEEPEEGIIFHNLYLDMNCIIHPCFHPQDQMHADVDVCP
PTTVSEVLESMFEHLDRLFRIIRPTRLLYLAVDGVVPCAKMNRVRRGRFYSAMLATSEAL
EEEKMRRELREQGKEVPPREISEVSDSNVITPGTEFMEKLSQALEYYTRYKLNTDPGWKD
IMVILSDANVPGEGEHKIMSFIRAQRSMEGYDPNTRHCLYGHDADLIMLALASHEVHFSI
LREGVLLPNQAETEGNSDKPYLFLNIWVLREYLELDLKILDPICEPDIERLIDDFIFICF
LMGNDFIPHIPSLETHEGAVHLLLEVYKTTFNKMGGYIVNTDKVKDKHGAYLEVSRLEIF
FHELSMYEEKIFLKRYELKQDLLQKLDDRLFNEDRPYDRVRLGLPGWKSRFHREYFGVET
SNEIEKLQNDMAEKYLEGLCWVFQCYFAGVPSWSWYYPFYVAPFVSDLKGLARFQISFTV
DKPLRPFDQLMAVLPLPSWCALPKCYHWNFMGRREDDYPKLQTDTNGKRFLWSGISEELL
LSATEAVDEKLTMDEVRRNTTRQDKVFLHRNSNALAHIKEVVVQTTYCSAQKLPIDSATS
GIGGWLSPDDNDGLSNSFFPSPIKNLQDITNDQAISAMFFNPEVGNPITRLLSDVRVPEK
TVSGADISKRPLWHTYPGSRPPPPIVQRPDSIWKPSTPVTPREEHKNAGTGWMGRGRGNN
AIAAAQAKLARSSSYGHGTATDTPRSSSSSSYSYRKGFHRVDMPHSRGSNSRFDNDGGGA
PWTGGGGGGDHAASAQPRRW
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggggataccttctttctacaagtggctcgtgaccagatacccaagcatcgtctccccc
gcaaaggaggaaccagaggagggcatcatcttccacaacctctacctcgacatgaactgc
atcatccatccttgcttccacccgcaggaccagatgcacgcagacgtagacgtgtgccct
ccgacaacggtcagcgaggtgttggagtccatgttcgagcacttggaccgcctgttccgc
atcatcaggccgacaaggcttctctacttagccgtagatggcgttgttccatgcgccaaa
atgaatcgagtgcgacggggacgtttctactctgccatgctagccacaagtgaggcactt
gaagaggaaaaaatgcggagggaattaagagagcaaggtaaggaggtgccaccgcgagag
atttccgaggtttctgactccaatgtcatcacaccagggactgagttcatggagaagctg
tcacaagcgctcgagtactacacccgttacaaattgaatactgaccccgggtggaaagac
attatggtcatactctctgatgcaaatgtgcccggagaaggagagcacaagatcatgtct
ttcatccgtgcgcaacgcagcatggaaggctatgaccccaacactcgacactgcttgtat
gggcatgatgcagatttgataatgcttgctttggcatctcacgaggtccacttctctatt
ttgcgtgagggtgtgctactcccaaatcaggcagaaaccgaagggaattcggataaacca
tatctgtttttgaacatatgggttctgagagagtacttggagcttgatttgaagatattg
gacccaatttgcgagcctgatatcgagaggctaatagatgacttcatctttatttgtttc
ttgatgggaaatgatttcatcccacatattccatcacttgagacgcatgagggtgcagtc
catcttcttttggaagtgtacaaaacaaccttcaacaaaatgggagggtatattgtcaac
acagataaagtgaaagataaacatggtgcatatctagaagtctcaaggttggaaatattt
tttcatgaactgtccatgtatgaagagaaaatttttctcaaaagatatgagctgaagcag
gatttgttgcagaaactagatgaccgcctttttaatgaagaccgtccatatgacagagta
agactgggattaccgggatggaaatcccggttccacagggaatattttggtgtggaaact
tctaatgaaattgaaaagctgcagaatgacatggctgagaagtatttagaaggactttgc
tgggtgtttcaatgctattttgcaggcgtaccatcatggagctggtactatccattctac
gttgctcctttcgtatctgatctcaagggtcttgctcggtttcagatatctttcactgtg
gacaaaccactacgaccatttgatcagctcatggcagttttgccattaccaagctggtgc
gctctcccaaaatgttaccactggaactttatgggacgtcgagaagatgactatccgaag
ttgcagactgacacgaacgggaaacgtttcttgtggagtggtatctctgaggaactgctg
ctttctgccactgaagcggtagatgagaagctgacgatggatgaggtgagacggaatact
actcggcaagacaaggtctttctgcacaggaactcaaacgctctggcacatatcaaagaa
gttgttgtacagacaacatactgttcagcgcagaagcttccgatagattcagctacgagt
ggaatcggggggtggttgtcgcctgatgacaatgatggcttgagcaacagtttctttccc
tcgcccataaaaaatctgcaggacatcacaaatgatcaggcaatatcagccatgttcttc
aatcctgaggtagggaatccaattacaaggctacttagcgatgtcagagtacctgagaag
actgtttcgggagctgacatctcaaagaggccactctggcacacgtacccgggctcaagg
ccgccaccgcccatcgttcagaggccggattctatctggaagccgagcacgccggtgacg
ccgcgggaagagcacaagaacgccggaacggggtggatggggcggggcagagggaataat
gccattgccgccgcccaggcgaagctcgccaggagcagcagctacgggcatggcactgcc
accgacacgccacggagcagcagcagcagcagctacagctataggaaaggtttccatcgg
gtggacatgccgcatagcagaggaagcaacagcaggtttgacaacgatgggggaggtgca
ccgtggactgggggaggcggcggcggcgaccatgccgcgagtgcgcagccacgtcgttgg
tag
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