Streptococcus intermedius C270: SII_0751
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Entry
SII_0751 CDS
T02831
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
siu
Streptococcus intermedius C270
Pathway
siu03030
DNA replication
siu03410
Base excision repair
siu03420
Nucleotide excision repair
siu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
siu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SII_0751 (ligA)
03410 Base excision repair
SII_0751 (ligA)
03420 Nucleotide excision repair
SII_0751 (ligA)
03430 Mismatch repair
SII_0751 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
siu03032
]
SII_0751 (ligA)
03400 DNA repair and recombination proteins [BR:
siu03400
]
SII_0751 (ligA)
Enzymes [BR:
siu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SII_0751 (ligA)
DNA replication proteins [BR:
siu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SII_0751 (ligA)
DNA repair and recombination proteins [BR:
siu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SII_0751 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SII_0751 (ligA)
MMR (mismatch excision repair)
DNA ligase
SII_0751 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SII_0751 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Ribosomal_L33
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
AGU77934
LinkDB
All DBs
Position
758549..760507
Genome browser
AA seq
652 aa
AA seq
DB search
MKDRMLELVKLLNQYAHEYYTTDNPSVSDSEYDRLYHELLDLEQQYPELVQADSPTHRVG
GKVLEGFEKYQHQYPLYSLQDAFSREELEAFDVRIRKDFPKVSYLCELKIDGLSISLMYE
NGILVAGATRGDGSVGENITENLKRVKDIPLVLSTAVNLTVRGECYMPRISFDRVNRLRQ
ENGEPEFANPRNAAAGTLRQLDTAIVAKRNLATFLYQEVSPTDMASQDAVLKKLSKNGFS
VNEQYILADSMDEVWEFIEKINQERKQLPYDIDGVVVKVNDLAMQEELGFTVKAPKWAIA
YKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKD
DTVIVYKAGDIIPAVLRVVEGKRQSEDKIEIPKYCPSCGSELIHFKDEVALRCINPRCPA
QIKEGLIHFASRDAMNIAGLGPAVVEKLFDQQLVKDVAGIYRLTVNDLLQLENFKEKSAN
KLYTAIQTSKENSAEKLLFGLGIRHVGSKASQILLEHFHDLEKLAKATREEVAALDSLGM
VIAESLTSYFAQEGTQILLEELKEVGINLAYLGKKVSADAALSGLIVVLTGKLERLNRSE
AKAKLESLGAKVTSSVSKKTSLVVAGADAGSKLTKAQELGIDIRDESWLENL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacagaatgttagaactggtgaaactactaaatcaatatgcgcatgaatattat
acaacggataatccaagcgtatcagatagtgaatatgataggttatatcatgaattgtta
gatttagaacagcaatacccagagctcgttcaggccgatagcccaactcatcgcgtgggt
ggtaaggttttagaagggtttgaaaaataccaacatcagtatccgctatatagtttgcag
gatgctttttcacgtgaagagttagaggcatttgatgtacggattcgcaaagattttcca
aaggtgagttatctgtgcgagttaaaaattgacggtctctccatttctcttatgtatgaa
aatggcattttggttgcaggagccactcggggagatggctctgtaggagaaaatatcaca
gaaaatttaaaaagagtcaaagatattccattagtcttgtcaactgctgtaaatctgaca
gttcgtggtgaatgttatatgccacgtatctcctttgatagggtgaaccgattgcggcag
gaaaacggggagccggaatttgcaaatccaagaaatgctgcagcaggaacgttacgccag
ttggatactgcaattgtggccaaacgtaatcttgcaacctttctctatcaagaagttagt
ccaacagacatggcgagccaagatgctgttttaaagaagttatctaaaaatggatttagt
gtgaatgaacagtatattttggctgattcgatggatgaagtatgggaattcatagaaaaa
atcaatcaagaacggaaacaattaccttatgatattgatggagttgtagttaaagtaaat
gatttggcaatgcaggaggagttaggttttactgtgaaagcacctaaatgggcgattgct
tacaagttcccggccgaagaaaaagaagctcaacttttatcagttgattggacggttggg
cgaactggagtggttacaccgactgctaatctaacacctgtgcaactagcaggtacgaca
gtcagtcgagcaactctgcacaatgtcgattacattgctgaaaaagatattcgtaaagac
gatacagttatcgtttataaggcgggtgatattatccctgctgttttgagagttgttgaa
ggtaaacgtcaatcagaggataagattgaaattcctaagtattgtccgagttgtggcagt
gaactgattcattttaaagatgaggttgccttgcgttgtatcaatccacgatgtcctgca
caaatcaaagaaggtttaattcattttgctagtcgtgatgccatgaatatcgcaggtctt
ggtccggctgttgttgaaaagttatttgatcagcaactggtaaaagatgtggctggtatt
taccgtttgactgtaaatgatttgttgcaattggagaattttaaggaaaaatcagctaac
aaattatatactgctattcaaacttctaaggaaaattctgctgagaaattattattcggc
ttaggtattcgccatgttggaagtaaagctagtcagattttactagagcattttcatgac
ttggagaagttagcaaaagcaactagagaagaagttgctgcactggatagcctaggaatg
gtaattgcagaaagcttaactagttattttgctcaggaaggcacacagattctattggaa
gaattgaaagaagtgggaattaatttagcttacctaggtaaaaaggtttcagcggatgcg
gctctttctggattaattgttgtgttaacagggaaattagagcgactaaatcgctcagaa
gcaaaagcaaaattagaaagtttaggtgcaaaggtaacgagctctgtttctaaaaaaaca
agtttagtcgttgctggagcagatgcaggaagtaaattaacaaaagctcaagagttagga
attgacattcgtgatgaatcttggcttgagaacttgtag
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