Solibacillus silvestris StLB046: SSIL_0494
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Entry
SSIL_0494 CDS
T02162
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
siv
Solibacillus silvestris StLB046
Pathway
siv03030
DNA replication
siv03410
Base excision repair
siv03420
Nucleotide excision repair
siv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
siv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SSIL_0494
03410 Base excision repair
SSIL_0494
03420 Nucleotide excision repair
SSIL_0494
03430 Mismatch repair
SSIL_0494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
siv03032
]
SSIL_0494
03400 DNA repair and recombination proteins [BR:
siv03400
]
SSIL_0494
Enzymes [BR:
siv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SSIL_0494
DNA replication proteins [BR:
siv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SSIL_0494
DNA repair and recombination proteins [BR:
siv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SSIL_0494
NER (nucleotide excision repair)
GGR (global genome repair) factors
SSIL_0494
MMR (mismatch excision repair)
DNA ligase
SSIL_0494
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SSIL_0494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RNA_pol_A_CTD
AphA_like
HHH_3
5_3_exonuc
BRCT_2
HHH_8
DUF7201
Motif
Other DBs
NCBI-ProteinID:
BAK14917
UniProt:
F2F7J2
LinkDB
All DBs
Position
550114..552111
Genome browser
AA seq
665 aa
AA seq
DB search
MNEIEQRIAELNKLLHEYGYAYYVLDKPVVEDSVYDQLLHELIALEEANPEFIYPDSPTQ
RVGGMVLEGFKKVTHETAMLSLSNAFNEEDLRDFDRKIEQAIGKNYSYVCELKIDGLAIS
LRYENGVFVQGATRGDGTVGEDITANLKTIRAIPLRLNEPVTLEVRGEAYMPKKSFEKLN
ERRAENGEELFANPRNAAAGSLRQLDPKIAASRNLSTFIYAVGGDGESYGIDGHWEMLKY
LEELGFPSNKEREYCETIEDVLAFIEKWTEARPNLSYEIDGIVIKVNRYAHQDELGFTAK
SPRWAIAYKFPAEEVITKLLDIELTVGRTGVITPTAILTPVLVAGTTVSRASLHNEDLIR
EKDIRIDDTVIVRKAGDIIPQIVGVVLEQRPDDAVPYKMPTHCPACDEEVVRIDTDVALR
CVNPQCPAQIAEGVKHFVSRNAMNIDGLGEKVVEQLLREGYIQDVAGLYELTVEQLINLE
RMGQKSATNLVEALIQSKDNSLERLLFGLGIRHVGEKAAKILAAHFETIDALMVATEEDL
KDIHEIGDKMAESIVAYFANEQVQQLIERLKGFGLNMSYKGKKIVVEAGANPFAGKTIVL
TGKLQQLTRNEAKAKIEQLGGTVAGSVSKKTDLVIVGEDAGSKLEKAQSLGIEIWDEVRL
IEQLI
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaatagaacaaagaattgcggaattaaacaagcttcttcatgagtatggctat
gcgtattatgtactggataaaccggtagtagaagatagtgtatatgatcagcttttacat
gaacttatcgcattagaagaagcaaatccggaatttatttatcctgattctcctactcag
cgtgtcggtggcatggtattggaaggctttaaaaaggtaacgcatgaaacagcaatgctt
agtttatcgaatgccttcaatgaagaagatttgcgtgattttgaccggaaaatcgagcag
gcaatcggtaaaaattactcctatgtatgtgaactgaaaattgatggtttggccatatct
ttacgctatgaaaacggggtttttgtacaaggcgctactcgtggtgacggaacggttggt
gaagatattacagccaacctgaagacaatccgtgccattcctttacgtttaaatgaacct
gtaacattagaagtgcgcggcgaagcctatatgccgaaaaaatctttcgaaaaactgaac
gaacgtcgagctgaaaatggcgaagagctatttgcaaaccctcggaatgcggcagcagga
tcgttgcgtcaattagacccaaaaattgcggcaagccgaaatttatcgacttttatatat
gcagttggcggggatggagaaagctatggaatcgatgggcattgggaaatgctcaagtat
ttggaggagctaggttttccatcgaataaagagcgtgagtattgcgaaactattgaggac
gttttggcgtttatagaaaagtggacagaagcgcgcccaaatttatcgtatgaaattgat
ggtatcgtcattaaagtgaatcgctatgcccaccaagatgagcttggctttacggcaaaa
tcgccgcgttgggcaattgcctacaaattcccggctgaagaagtgataacaaaattactg
gatatcgaactgacggtaggtcgtacgggcgttattactccgacagcgattttaacaccg
gtacttgtagccggaacaactgtgagccgtgcatcattgcacaatgaagacctgattcgt
gaaaaggacattcgaatcgatgatacggtcattgtgaggaaagcgggggatattattccg
caaattgtgggggttgttctggaacagcgcccggatgacgctgtaccatataaaatgccg
acccattgtcccgcatgtgatgaagaagttgtacgcattgatactgatgtagcattgcgc
tgcgtgaatccgcaatgtcctgcacaaatcgcggaaggtgtgaagcatttcgtttcccgc
aatgcgatgaatatcgacggtcttggcgagaaggtagtagaacagctgctgagagaaggc
tatattcaagatgtagcaggactatatgaactgacagtagaacaactgatcaacctggag
cgaatggggcaaaaatcggcgacaaatttagttgaagcacttattcagtcaaaggacaat
tcgctggaacgactattattcggtcttgggattcgccatgttggtgaaaaagcagctaag
attttggcagcacattttgaaacaatcgatgcattaatggttgccactgaagaagatttg
aaagatattcatgaaattggcgataaaatggccgagtcgattgtcgcgtattttgcaaac
gagcaagtacaacaattaatcgaacgcctaaaaggatttggcttaaatatgagctataaa
ggcaagaaaattgtcgtggaagcaggggcaaatccttttgctggtaaaacaattgtactg
acaggcaaattacagcaattgacacgtaacgaagcaaaggcgaaaatagaacagttaggt
ggtacggttgcagggagtgtcagtaaaaaaacagaccttgtaattgtcggagaagatgca
ggctcgaagctagaaaaggcacaaagcttaggcattgaaatttgggatgaagtgcgccta
atcgaacaattaatatag
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