Stappia indica: GH266_06625
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Entry
GH266_06625 CDS
T06350
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
siw
Stappia indica
Pathway
siw03030
DNA replication
siw03410
Base excision repair
siw03420
Nucleotide excision repair
siw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
siw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GH266_06625 (ligA)
03410 Base excision repair
GH266_06625 (ligA)
03420 Nucleotide excision repair
GH266_06625 (ligA)
03430 Mismatch repair
GH266_06625 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
siw03032
]
GH266_06625 (ligA)
03400 DNA repair and recombination proteins [BR:
siw03400
]
GH266_06625 (ligA)
Enzymes [BR:
siw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GH266_06625 (ligA)
DNA replication proteins [BR:
siw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GH266_06625 (ligA)
DNA repair and recombination proteins [BR:
siw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GH266_06625 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GH266_06625 (ligA)
MMR (mismatch excision repair)
DNA ligase
GH266_06625 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GH266_06625 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
Cas12f1-like_TNB
Motif
Other DBs
NCBI-ProteinID:
QGZ34214
UniProt:
A0A857C5N2
LinkDB
All DBs
Position
complement(1387376..1389544)
Genome browser
AA seq
722 aa
AA seq
DB search
MSDNDLSSRAVEDLTLEEAALELERLAEEIAGHDRRYHGEDAPVISDADYDALKRRNDAI
EARFPDLVRSDSPSLRVGAAPSEGFGKVTHAIPMLSLDNAFADEDVRDFFGRIRRFLKLD
PLMGAIAVTAEPKIDGLSLSLRYEKRRLVSAATRGDGTVGENVTQNALTIEDIPQRLPDT
APDIVEVRGEVYMRHEDFRALNARMEEQGGKVFANPRNAAAGSLRQLNPEVTRARPLRFF
AYAWGEMSEVPRATQYEMVQLLGEWGFSINARMVRCETVEEILAAYHGIEEERALLGYDI
DGMVYKVDRLDLQSRLGFVSRAPRWAIAHKFPAEKAFTVLRGIEIQVGRTGALTPVAKLE
PVTVGGVVVSNATLHNEDYIKGIGQDGEPIRGGKDIRVGDTVQIQRAGDVIPQIVDVDLD
KRPADAEPFAFPTTCPACGSHAVRDVNASSGRIDAVRRCTGGLICPAQAKEKLKHFVSRH
ALDIEGLGDKQVEFFFDLPMEEGGIRQPADIFTLAERDAASPLIKLRNRDGWGETSAANL
FAAIDARREMSLNRVIFALGIRHVGEGNAKLLARHYLDWETFRTAMQAAADPASDAFAEL
MDIDGIGETVARAVVEFFAEDHNRGALDALLAQIRPQSMERVEASASPVAGKTLVFTGTL
EKMSRDEAKARAEAMGAKVSGSVSKKTDLVIAGPGAGSKLKKAEELGLDVIDEDAWIEMA
GG
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgtccgataacgatctctcgtcccgcgccgtcgaagacctgaccctggaagaggccgcg
ctggagctggaacggctggccgaggagatcgcgggtcacgaccggcgctatcatggcgag
gacgcgccggtcatttccgatgccgactacgatgcgctgaagcggcgcaacgatgccatc
gaggcgcggtttcccgatctcgtgcgctccgacagcccgtcgctgcgcgtcggagctgcg
ccgtccgaaggcttcggcaaggttacccatgcgatcccgatgctgtcgctggacaatgcc
tttgccgacgaggacgtgcgcgatttcttcggccgcatccgccgcttcctgaagctcgat
ccgctgatgggggcgatcgcggtgacggccgagccgaagatcgacgggctgtcgctgtcg
ctgcgctacgagaagcgccgcctggtgagcgcggcaacgcgcggcgacggcacggtcggc
gagaacgtgacgcagaacgccctgaccatcgaggacattccccagcgcctgccggatact
gcgcccgatatcgtcgaggtgcgcggcgaggtctatatgcgccacgaggatttccgcgcg
ctcaatgcgcggatggaggagcagggcggcaaggtcttcgccaatccgcgcaacgcggcg
gcgggctccctgcgccagctcaacccggaagtgacgcgcgcgcggccgctgcgcttcttc
gcctatgcctggggcgagatgagcgaggtgccgcgcgccacccaatacgagatggtgcag
ctgctcggcgagtggggcttttcgatcaatgcccgcatggtccgctgcgagactgtggaa
gagatccttgccgcctatcacggcatcgaggaggagcgggcgctgctcggctacgacatc
gacggcatggtctataaggtcgaccggctcgacctgcagtcgcgcctcggcttcgtctcg
cgcgcgccccgctgggcgatcgcccacaagttcccggccgagaaggccttcaccgtgctg
cgcggcatcgagatccaggtcgggcgtaccggcgcgctgaccccggtcgccaagctggag
ccggtgacggtgggcggcgtcgtcgtctccaatgcgacgctgcacaacgaggactacatc
aagggcatcggccaggatggcgagccgatccgcggcggcaaggacatccgggtcggcgat
acggtgcagatccagcgcgccggcgacgtcattccgcagatcgtcgatgtcgacctcgac
aagcgccccgcggatgccgagccctttgccttcccgaccacgtgccccgcctgcggcagc
cacgcggtgcgggacgtcaatgcctcgagcgggcgcatcgacgccgtgcgccgctgcacc
ggcgggctgatctgcccggcgcaggccaaggaaaagctgaagcatttcgtctcgcgccac
gcactcgacatcgaggggctgggcgacaagcaggtggagttcttctttgatttgccgatg
gaggagggcggcatccgccagccggccgacatcttcacgctggcggagcgggatgccgcc
tcgccgctgatcaagctgaggaaccgcgacggctggggcgagacgagcgctgccaacctc
ttcgctgccatcgacgcgcggcgcgagatgtcgctcaaccgggtgatcttcgcgctcggc
atccgccatgtcggcgagggcaacgccaagctgctggcccgccactatctcgactgggag
accttccgcacggcgatgcaggcggcggccgatcccgcctccgatgccttcgccgaactg
atggacatcgacggcatcggcgagacggtggcacgggcggtggtcgagttcttcgccgag
gaccacaaccgcggggcactcgacgcgctgctggcgcagatccggccgcagtcgatggag
cgggtggaggcgagcgccagcccggtcgccggcaagacgctggtcttcaccggcacgctg
gagaagatgagccgcgacgaggccaaggcgcgcgccgaggcgatgggggcgaaagtttcc
ggctcggtgtcgaagaagaccgacctcgtgatcgccggtcccggcgccggctccaagctg
aagaaagccgaggaactgggcctcgacgtcatcgacgaggatgcctggatcgagatggcg
ggaggctga
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