Sinorhizobium sp. RAC02: BSY16_634
Help
Entry
BSY16_634 CDS
T04514
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
six
Sinorhizobium sp. RAC02
Pathway
six03030
DNA replication
six03410
Base excision repair
six03420
Nucleotide excision repair
six03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
six00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BSY16_634 (ligA)
03410 Base excision repair
BSY16_634 (ligA)
03420 Nucleotide excision repair
BSY16_634 (ligA)
03430 Mismatch repair
BSY16_634 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
six03032
]
BSY16_634 (ligA)
03400 DNA repair and recombination proteins [BR:
six03400
]
BSY16_634 (ligA)
Enzymes [BR:
six01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BSY16_634 (ligA)
DNA replication proteins [BR:
six03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BSY16_634 (ligA)
DNA repair and recombination proteins [BR:
six03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BSY16_634 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSY16_634 (ligA)
MMR (mismatch excision repair)
DNA ligase
BSY16_634 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BSY16_634 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
RNA_ligase
DUF6981
Lar_restr_allev
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
AOF92044
LinkDB
All DBs
Position
676642..678801
Genome browser
AA seq
719 aa
AA seq
DB search
MANAKTPVENLTEDEAAAELAFLAAEIARNDELYHGQDAPEISDADYDALKRRNEDIEAR
FPALVRDDSPSRRVGSAPLPTFAPITHSRPMLSLDNTFSDEDVRDFVNSVYRFLGRLPDE
SIAFTAEPKIDGLSMSIRYENGRLVSAATRGDGTTGENVTANVQTISEIPNRLPAGAPAV
VEVRGEVYMAKSDFLALNEKMAAEGKQTYVNPRNTAAGSLRQLDATVTASRKLRFFAYAW
GEMSEMPANTQFGMIEVLKSWGFPVNPMTQRLSRVDDIIAHYREIGLARPDLDYDIDGVV
YKVDELALQERLGFRSRSPRWATAHKFPAEQAFTTVEKIDIQVGRTGALTPVARLTPVTV
GGVVVTNATLHNADYIEGIGNSGERIRAEDHDIRIGDTIIVQRAGDVIPQVLDVVMEKRP
AETERYQFPKTCPVCGSHAVRERNEKTGRLDSVTRCTGGFVCRAQAVEHLKHFVSRNAFD
IEGLGAKQIDFFFEAKDPSLAVRTAPDIFTLEKRQADSLTKLENIDGFGKVSVRKLYDAI
DARRSIALNRFIYALGIRHVGETNAKLLARAYGTYAAFEEAMKASAPLTGEAWNELNSID
GIGEVVARAMVEFYKEPRNLDVMARLLEEVTPEAAEAVVVTSSPVVGKTVVFTGSLEKMT
RDEAKAMAERLGAKVAGSVSKKTDLVVAGPGAGSKLDKAKEFNVEVIDEDGWFELIKGS
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgcgaaaacccctgtcgaaaacctgaccgaagacgaagccgcagcggagctg
gcctttctggcggcggagatcgcgcgcaatgacgagctttatcacgggcaggatgcgccg
gagatttcggatgccgattacgatgcgctgaaacggcgcaacgaagacatcgaggcgcgc
tttcctgccctcgtgcgcgacgacagtccctcgcggcgtgtcggctccgcgccgctgccg
accttcgcgccgatcacccactcccgcccgatgctgtcgctcgacaacacgttctccgac
gaggacgtgcgggatttcgtcaattcggtctaccgctttctcggccgcctgccggacgaa
tcgatcgccttcaccgccgagccgaagatcgacggcctttccatgtcgatccgctatgaa
aacgggcggctggtcagtgccgcaacgcgcggcgacggcacgacgggcgagaatgtcacg
gccaatgtccagacgatcagcgaaatcccgaaccgcctgccggccggcgcgcctgccgtc
gtcgaggtgcgcggcgaagtctacatggccaagagcgactttctggcgctcaacgagaaa
atggcggcggagggcaagcagacctacgtcaatccgcgcaacacggccgccggctcgctg
cgtcagctcgacgccacggtgacggccagccgcaagctgcgcttcttcgcctatgcctgg
ggcgaaatgtccgagatgccggcgaacacgcagttcggtatgatcgaggtgctgaaatcc
tggggttttcccgtcaatccgatgacgcagcggctgtcgcgcgtcgatgacatcatcgcg
cattaccgcgagatcggcctcgcccgtccggacctcgactatgatatcgacggtgtcgtc
tacaaggtcgatgaactggcgcttcaggagcgcctcggcttccgctcccgctcgccacgc
tgggcgactgcgcataagtttccggccgaacaggctttcaccacggtcgaaaagatcgac
atccaggtcggccgcaccggcgcgctgacgcctgtcgcgcgcctcacgccggttacggtc
ggcggcgtggtcgtcaccaacgcgaccctgcacaatgccgactatatcgaaggtatcggc
aacagcggcgagcgcattcgcgcggaagaccatgacatacgcatcggcgataccatcatc
gtgcagcgcgcgggcgatgtgatcccacaggtgctggacgtggtgatggaaaagcgacca
gcggagaccgagcgctaccagttcccgaaaacctgcccggtctgcggcagccacgccgtg
cgcgagcgcaacgagaagacgggccggcttgattccgtcacccgctgcaccggcggtttc
gtctgccgggcgcaggccgtggagcatctgaagcacttcgtctcgcgcaacgccttcgac
atcgagggactgggcgccaagcagatcgatttcttcttcgaggcgaaggacccgtcgctt
gcggtgcgcaccgcgccggacattttcacgctggagaagcggcaggccgattctctgacc
aagctcgaaaacatcgacggcttcggcaaggtcagcgtgcggaaactctatgatgccatc
gacgcccgccgctcgattgcgctcaaccgtttcatttacgcgctcggcatccgccatgtc
ggtgagacgaacgccaagcttctggcgcgcgcctatgggacttacgccgctttcgaggag
gcgatgaaggcttcggcgccgctgacgggcgaagcgtggaacgaactcaacagcatcgac
ggtatcggcgaggtcgtcgcccgtgccatggtggagttctacaaggaaccgcgcaatctc
gatgtgatggctcggctgcttgaggaagtcacgcctgaggccgcggaggccgttgtcgtg
acctcgagcccggtcgtcggcaagacggtggtgttcaccggttcgctggaaaagatgacg
cgcgacgaggcgaaggccatggcggagcggttgggcgccaaggtggcgggttctgtttcg
aagaagaccgaccttgtggtggcggggccgggcgcgggttccaagctcgacaaggcaaaa
gagttcaatgtcgaggtgatcgacgaggacggctggttcgagctcatcaagggatcgtga
DBGET
integrated database retrieval system
