Shewanella japonica: SJ2017_2617
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Entry
SJ2017_2617 CDS
T04959
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sja
Shewanella japonica
Pathway
sja03030
DNA replication
sja03410
Base excision repair
sja03420
Nucleotide excision repair
sja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SJ2017_2617
03410 Base excision repair
SJ2017_2617
03420 Nucleotide excision repair
SJ2017_2617
03430 Mismatch repair
SJ2017_2617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sja03032
]
SJ2017_2617
03400 DNA repair and recombination proteins [BR:
sja03400
]
SJ2017_2617
Enzymes [BR:
sja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SJ2017_2617
DNA replication proteins [BR:
sja03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SJ2017_2617
DNA repair and recombination proteins [BR:
sja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SJ2017_2617
NER (nucleotide excision repair)
GGR (global genome repair) factors
SJ2017_2617
MMR (mismatch excision repair)
DNA ligase
SJ2017_2617
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SJ2017_2617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ARD22906
LinkDB
All DBs
Position
complement(3109491..3111497)
Genome browser
AA seq
668 aa
AA seq
DB search
MQDIKTEIQQISSELHSHNIRYYVDDAPSIPDAEYDRLMQRLIALETANPELMSADSPTQ
RVGGAPLAKFDQITHLKPMLSLDNAFEQADFEAFNKRISDKVDTVHYCCEPKLDGLAVSI
LYRNGILERAATRGDGAVGEDITDNVKTIKSVPLKLRGEHFPELLEVRGEVIMPKAAFDA
LNERQLSKGEKVFVNPRNAAAGSLRQLDSKITATRALGFYAYALGVVEGEVTPLADTHFG
QLNQLKEWGLPLSQEVKVCESLPEVFAYYADIMARRSELSYEIDGVVIKVNDIAKQQVLG
FVARAPRWAIAYKFPAQEEMTLLEDVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNA
DEIARLGVKVGDTVIIRRAGDVIPQIVAIVPEKRPDNATEITFPSECPVCQSLVERLEGE
AVARCSGGLFCEAQRKEAIKHFASRKALNIDGMGDKVVEQLIDKELVQSPAELFTLTASM
VTMLERMAMKSATKLIAAIDDAKTTTLARFIYALGIREVGEATAANLASHYKTLDAIKAA
DIDALIEVDDVGTIVAKHIAHFFAQPHNLEVIDKLIEAGVNWPAIEAVDEAELSLKGQTW
VLTGTLTQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQDLGVKVINED
ELLALLKA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacattaaaacagaaattcagcaaattagcagtgaactgcatagccataatatt
cgttattacgttgacgatgctcctagtattccagatgctgagtatgaccgtttaatgcaa
cgtttaatcgcacttgaaacagctaaccctgaactaatgagtgcggactctccgacacaa
cgtgtaggcggcgctcctctggccaaatttgatcaaattacccatttaaagccgatgttg
agccttgataatgcttttgaacaagctgattttgaggcatttaataaacgtattagcgat
aaagttgatacggttcattattgttgtgagcctaaattagatggtctagctgtcagtatt
ttataccgtaacggtatattagaacgggcggcaacacgtggtgacggagcggtaggcgaa
gacattaccgataatgttaaaactattaagtcagtgccactcaaattacgtggagaacac
tttccagagctattagaggtacgtggtgaagtcatcatgccaaaagcggcttttgatgcg
ttaaatgaacgtcaattgagtaaaggcgaaaaggtctttgttaatccacgtaatgcggcc
gcaggtagtttaagacagctagatagtaaaattactgcaacacgtgcactaggcttctat
gcctatgcattaggggtagtcgaaggtgaagtgactcctctagctgatacccattttggg
caactaaaccagcttaaagaatgggggctaccgttaagccaagaagtgaaagtctgcgag
tctttaccagaagtgttcgcttattatgccgatattatggctcgcagaagtgagttatct
tacgaaattgatggcgtcgtcataaaagttaacgatattgccaaacagcaagtgcttggt
tttgttgcgcgtgcgccgcgctgggctatcgcgtataagtttccagctcaagaagaaatg
accttactagaagatgtggattttcaagtcggtcgtacaggcgcggtaacgccagttgca
cgtttaaaacctgtcttcgtgggcggcgttactgtatcaaatgccacgttacacaatgcc
gatgaaatcgcgcgtttaggcgtcaaagttggtgataccgtaattattcgccgcgcgggt
gatgtgattccgcaaatcgtggccattgtgccagaaaaacgccctgataatgcgactgag
attactttcccgtcagagtgtcccgtatgtcaaagtttagtggaacgtcttgagggcgaa
gcggttgctcgatgcagcggtggtttgttttgtgaggctcaacgtaaagaagcgattaag
cattttgcttcacgaaaagcgttaaatattgatggtatgggcgataaagtcgttgagcag
ctgattgacaaggaacttgtacaaagccctgctgaactgtttaccttaactgcatcaatg
gtgaccatgcttgaacgtatggcaatgaagtcagcgacaaagttaattgctgcgatagat
gatgcgaagaccacgacgttagcgcgtttcatctatgctttggggatccgtgaagtgggc
gaggcaacagccgctaacttagcaagtcactataaaacgctggatgcaattaaagcggca
gatattgatgccttaattgaagtggatgatgtcgggacaattgtggcaaagcatattgcg
cacttttttgctcaacctcataaccttgaagtcattgataagttaattgaagcaggtgtg
aattggcctgcgattgaagctgttgatgaggctgaattaagtcttaaaggccaaacgtgg
gtgttaacaggcaccttaactcagctaaatcgaaatgatgctaaagctcaattacaagcc
ttgggagcgaaagttgcgggtagtgtatcaaaaaatactgactgcttagtggcaggtgag
gccgctggttctaaactggctaaagcgcaggatttaggcgttaaagtgattaatgaagac
gagctattagctttattaaaggcataa
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