Streptococcus pneumoniae JJA (serotype 14): SPJ_1055
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Entry
SPJ_1055 CDS
T00873
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sjj
Streptococcus pneumoniae JJA (serotype 14)
Pathway
sjj03030
DNA replication
sjj03410
Base excision repair
sjj03420
Nucleotide excision repair
sjj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sjj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPJ_1055 (ligA)
03410 Base excision repair
SPJ_1055 (ligA)
03420 Nucleotide excision repair
SPJ_1055 (ligA)
03430 Mismatch repair
SPJ_1055 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sjj03032
]
SPJ_1055 (ligA)
03400 DNA repair and recombination proteins [BR:
sjj03400
]
SPJ_1055 (ligA)
Enzymes [BR:
sjj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SPJ_1055 (ligA)
DNA replication proteins [BR:
sjj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SPJ_1055 (ligA)
DNA repair and recombination proteins [BR:
sjj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SPJ_1055 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPJ_1055 (ligA)
MMR (mismatch excision repair)
DNA ligase
SPJ_1055 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPJ_1055 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ACO18100
UniProt:
C1CEA4
LinkDB
All DBs
Position
1000322..1002280
Genome browser
AA seq
652 aa
AA seq
DB search
MNKRMNELVALLNRYATEYYTSDNPSVADSEYDRLYRELVELETAYPEQVLADSPTHRVG
GKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHPTYICELKIDGLSISLTYE
KGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEELDITVRGECYMPRASFDQVNQVRQ
ENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPSTRDSQEKGLKYLEQLGFV
VNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVA
YKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKD
DTVIVYKAGDIIPAVLRVVESKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPA
QIMEGLIHFASRDAMNITGLGPSIVEKLFAANLVKDVADIYRLQEEDFLLLEGVKEKSAA
KLYQAIQASKENSAEKLLFGLGIRHVGSKVSQLLLQYFHSIENLSQADSEEVASIESLGG
VIAKSLQTYFATEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSE
AKSKLESLGAKVTGSISKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagaatgaatgagttagtcgctttgctcaatcgctatgcgactgagtactat
accagcgataatccctcggttgcagacagtgagtatgaccgcctttaccgtgagttggtc
gagttagaaactgcttatccagagcaagtgctagcagacagtccgactcatcgtgttggt
ggcaaggttttagatggttttgaaaaatacagtcatcagtatcctctttatagtttgcag
gatgctttttcacgtgaggagctagatgcttttgatgcgcgtgttcgtaaggaagtggct
catccgacctatatttgtgagctgaaaatcgatggcttatctatctcgctgacttatgaa
aaggggattttggttgctggggtaacacgtggagatggttcaattggtgaaaatatcaca
gaaaacctcaagcgtgttaaggacatccctttgactttgccagaagaactagatatcaca
gttcgtggggaatgttacatgccacgcgcttcctttgaccaagttaaccaagtgcgccaa
gaaaatggagagcctgaatttgctaatcctcgtaatgcggcagcaggaactctgcgtcag
ttggatacagcagtagttgccaagcgtaatcttgcaacgtttctctatcaagaagccagc
ccttcaactcgtgatagccaagaaaagggtttgaagtacctagaacaactaggttttgtg
gtcaatcctaagcgaatcttggctgaaaacatagatgaaatctggaattttatccaagaa
gtaggacaggaacgggaaaatctgccttacgatattgatggagtggtaatcaaggtcaac
gacctagcaagtcaagaagaacttggttttacagttaaggctccaaagtgggcagtagcc
tacaagttccctgccgaagaaaaagaagctcaactcttatcagttgactggacagttggc
cgtaccggtgttgtaactccaactgctaatctaacaccagtacaacttgccggtacgact
gttagccgtgcgaccctgcacaatgtagattatattgctgaaaaagatatccgaaaagac
gatacggtcattgtatataaggctggtgacatcatccctgccgttttacgtgtggtagag
tccaaacgggtttctgaagaaaaactagatatccctacaaactgtccaagttgtaactct
gacttgttgcactttgaagatgaagtggccctacgttgtatcaatccgcgttgccctgct
caaatcatggaaggcttgattcactttgcttctcgtgatgctatgaatattacaggcctt
ggtccatctattgttgagaagctttttgctgctaatttagtcaaggatgtggcggatatt
tatcgtttgcaagaagaggatttcctccttttagagggggttaaggaaaagtccgctgct
aaactgtatcaggctatccaagcatcaaaggaaaattctgccgagaagctcttatttggt
ttgggaattcgtcatgtcggaagcaaggttagtcagcttttacttcaatatttccattca
attgaaaatctgtctcaggcagattcagaggaagtggctagtattgaaagtctaggtggc
gtgattgccaaaagtcttcagacttattttgcgacagaaggctctgaaattctgctcaga
gaattgaaagaaactggggtcaatctggactataaaggacagacggtagtagcggatgcg
gccttgtcaggtttgaccgtggtattgacaggaaaattggaacgactcaagcgctcagaa
gctaaaagtaaactcgaaagtctgggtgccaaagtgacaggtagtatttctaaaaagacc
gacctcgtcgtggtaggtgcagacgctggaagtaaactgcaaaaagcacaagaacttggt
atccaggtcagagatgaggcatggctagaaagtttgtaa
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