Streptomyces janthinus: RI060_12085
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Entry
RI060_12085 CDS
T09385
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sjn
Streptomyces janthinus
Pathway
sjn03030
DNA replication
sjn03410
Base excision repair
sjn03420
Nucleotide excision repair
sjn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sjn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RI060_12085 (ligA)
03410 Base excision repair
RI060_12085 (ligA)
03420 Nucleotide excision repair
RI060_12085 (ligA)
03430 Mismatch repair
RI060_12085 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sjn03032
]
RI060_12085 (ligA)
03400 DNA repair and recombination proteins [BR:
sjn03400
]
RI060_12085 (ligA)
Enzymes [BR:
sjn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RI060_12085 (ligA)
DNA replication proteins [BR:
sjn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RI060_12085 (ligA)
DNA repair and recombination proteins [BR:
sjn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RI060_12085 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RI060_12085 (ligA)
MMR (mismatch excision repair)
DNA ligase
RI060_12085 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RI060_12085 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
WND18031
LinkDB
All DBs
Position
complement(2716950..2719145)
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTTVPAEAREKHARLAEQIEEHRFRYYVKDAPVVSDAEFDQLLRSLEALEED
HPELRTPDSPTQKVSGSYETEFTAVEHRQRMLSLDNTFNDEAMAAWTERIARELGEQDYH
FLCELKVDGLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTIAEIPERLKGDSVPDLVE
IRGEVYFPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LEGFTGLTRLSQAYDLLKTWGLPVSGHNRVVDGLDGIREFIAYFGENRHSVEWEIDGVVV
KLDQIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECP
ECGTALRPMKEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVAAAALTAPLEP
KDPPLVDEGDLFDLTIDQLLPIKAYVLDTDSGLPKRDPKTGEEKVATIFANQEGNPRKNA
LAMLENIAAAKQRPLARILTSLSIRHVGPVAAEALAREFRSIERIDQATEEELAVTEGVG
STIAASLKQWFAEDWHREIIRKWKAAGVRMEEESTGEDEGPRPLEGLTVVVTGTLEHFTR
DGAKEALQTRGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQLKVPVLNEEGFGVLLEEGPE
AAAEVALSAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggggacaagcaagcggagacgacgacggtgcccgccgaggcacgggagaagcac
gcgcgcctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgctccc
gtcgtcagcgacgcggagttcgaccaactgctgcgttccctggaggcgctggaggaggac
catccggagctgcgcaccccggactcgccgacccagaaggtgtccgggtcgtacgagacg
gagttcacggcggtcgagcaccgccagcgcatgctctccctcgacaacacgttcaacgac
gaggcgatggccgcatggacggagcgcatcgccagggaactgggcgagcaggactaccac
ttcctgtgtgagctgaaggtcgacggcctcgccgtgaacctcacctacgagcgcggccgg
ctcacccgcgcggcgacccgcggcgacggccgcaccggcgaggacatcacgccgaacgtc
cggacgatcgccgagatcccggagcgcctcaagggcgactccgttcccgatctcgtggag
atccgcggcgaggtctacttcccgatggagaagttccaggagctcaacgcccgtctggtc
gaggccggcgacaagcccttcgccaacccgcgcaacgcggcggcaggttcactgcgccag
aaggacccgcgcgtcaccgccacccggcccctgcacatggtggtccacggcatcggcgcc
ctggagggcttcaccggcctgacccgcctctcccaggcctacgacctgctgaagacctgg
ggcctgcccgtttccggccacaacagggtggtcgacggcctcgacggcatccgggagttc
atcgcgtacttcggcgagaaccgccactccgtggagtgggagatcgacggcgtcgtcgtc
aagctcgaccagatcccgctccagggccgcctcgggtccacctcgcgcgcgccgcgctgg
gccatcgcgtacaagtacgcgccggaggaggtcaacaccaagctcgtcaacatccgcgtg
ggtgtgggccgcacgggccgggtcacgccgtacgcccaggtcgagccggtcacggtcgcc
ggctccgaggtcgagttcgccacgctgcacaaccaggacgtggtcaaggccaagggcgtc
ctcatcggcgacacggtggtgctgcgcaaggccggtgacgtcatccccgagatcctcggg
ccggtcgccgacctgcgcgacggcagcgagcgcgagttcgtgatgccggccgagtgcccc
gaatgcggtacggcgctgcggccgatgaaggagggcgacgtcgacctgcgctgcccgaac
gcccgcacctgcccggcccagttgcgcgagcgcctgttctacctcgcgggccgcaaggcg
ctggacatcgagcacttcggctacgtggcagcggcggccctcaccgcgccgctggagccg
aaggacccgccgctggtcgacgagggcgacctgttcgacctcaccatcgaccagttgctg
cccatcaaggcatacgtcctcgacacggacagcggcctgcccaagcgtgacccgaagacc
ggcgaggagaaggtcgccacgatcttcgcgaaccaggagggcaacccccggaagaacgcg
cttgccatgctggagaacatcgcggcggccaagcagcgcccgctcgcccgcatcctcacc
agcctgtcgatccgtcacgtcggccccgtcgctgccgaggctctggcccgcgagttccgc
tcgatcgagcgcatcgaccaggccacggaggaggaactggcggtcaccgagggcgtcggt
tcgaccatcgccgcttccctcaagcagtggttcgccgaggattggcaccgcgaaatcatc
cgtaagtggaaggccgccggcgtccgcatggaggaggagagcaccggcgaggacgagggg
ccgcgcccgctcgaagggctcaccgtcgtcgtcaccggcactctcgaacacttcacgcgg
gacggcgccaaggaggcgctgcagacccgcggagcgaaggtgaccggatcggtttcgaag
aagacatcattcgtcgttgtgggtgacagccccggatcgaaatacgacaaggcgatgcag
ctgaaggttccggtcctgaacgaggaagggttcggcgtcctgctggaagaagggccggaa
gcggcggccgaagtcgcgctttcggccgaggagtag
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integrated database retrieval system
