Scomber japonicus (chub mackerel): 128353059
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Entry
128353059 CDS
T09718
Symbol
dhx57
Name
(RefSeq) putative ATP-dependent RNA helicase DHX57
KO
K13026
ATP-dependent RNA helicase DHX57 [EC:
5.6.2.6
]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
sjo03012
]
128353059 (dhx57)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128353059 (dhx57)
Translation factors [BR:
sjo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
128353059 (dhx57)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
RWD
HA2_N
zf-CCCH_4
zf-CCCH
Torus
AAA_22
nSTAND3
GIT_CC
zf_CCCH_4
NPHP3_N
AAA_19
AAA_14
NB-ARC
Viral_helicase1
AAA_16
Motif
Other DBs
NCBI-GeneID:
128353059
NCBI-ProteinID:
XP_053169709
LinkDB
All DBs
Position
23:10996561..11004990
Genome browser
AA seq
1323 aa
AA seq
DB search
MPMQRIFMTNENQEQLKELLRHLQTQDCDEVYDESGSDYSRGEEEEEYDELDHRDEGQFW
ATTDDPVERAESPEYDPESDDERPPPEPVISLFAIGKLCRYGFDRERSKQALEAGGGDFG
ATLEQLLHQVFSERYGQKAISPDGLSGVPMDECLSQRQEEALALAAIYGERFNERIANTV
WTITLDLLFLAEGNKSGGVVGSRYGERPVNIRDVCRFYLKGQGCRFGNKCKFKHQMPTEG
RSGAGSPDLTGPSQPGINSYSPPEYELEIRFPKGNRYPFQAPIVAFSTNDESMGAAGRLS
MTERLFGEALAAAKSNEPVVYTLTTMCEDETTMKELLAVSHHKYSTPPPVVAPPPPSLSI
AKSKSVRSSASEESRSSSTSSSNYTNSRRTAPSYSQRHLTFKETEEAEELDERDEEVDDD
AVPVESESYVNLKKRMANRHNMKIENLLQENGKLCREFQRKQSSRRFKSMLEQRRKLPAW
QEQDNILDLLDRCQVLVVSGMTGCGKTTQIPQFILDASLNGPANQVANIICTQPRRISAI
SVAQRVAQERAECLGNSVGYQIRLESVRTSATRLLYCTTGVLLRRLEGEVDLKGVTHVIV
DEVHERTEESDFLLLVLKDLITQRPDMKIILMSATLNANLFSEYFYNCPTVHIPGRTFPV
DQFFLEDAITKTNYVIEDGSPYMRSGKQNSSSTSGRGSKGGSRDVVDDLGDDMWNFMSFS
KKDLVKDSIPDQQLSFQDLTVRYKDTKKSALKTMAAMDLDKINMDLVESVLEWIVDGKHN
YPPGAVLVFLPGLAEIKMLYEQLKSNRMFNNRGASRCVVYPLHSTLSNEEQQAVFSRPPE
GVTKIIISTNIAETSVTIDDVVYVIDSGKMKEKRYDASKSMESLEDSWVSRANALQRKGR
AGRVASGVCFHLFTSHCFQHQLPEQQLPEIQRVPLEQLCLRIKILDVFSEQMLESVFSRL
IEPPAMGSLDAAKQRLQDLGALTADERLTPLGYHLACLPVDVRIGKLMLFGAIFRCLDPA
LTIAASLAFKSPFVSPWDKREEANEKKLAFALASSDHLALLQAYKGWCSAAKNGHQAGFL
YCRENFLSWRGLQEIASLKRQFAELLSDIGFIKEGLRARVIERMSSKGTDGVLEATGPEA
NLNSDNIRLMSAMLCAALYPNVVQVRAPQGNYKMTSKGAMKMQPKANELRFMTKDDGCVH
VHPSSVNYTVRHYNSPYLVYHEKVKTSRIFIRDCSMVSVYPLVLFGGGQVNVELHKGDFV
ISLDDGWIRFAAASHQVAELVKELRWELDQLLEDKIRNPSMDLCSCPRGSRIIHMIVHLI
TTQ
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgcccatgcagaggattttcatgactaatgagaaccaagaacaactcaaagagctgctg
cggcatctacagacccaggattgtgatgaggtctatgatgaatctggctcagattattcg
aggggcgaggaggaggaggaatatgatgagttggaccaccgtgacgaaggccagttttgg
gccactacggatgatcctgtggagagagcagagagcccagaatatgatccggagtctgac
gatgaacgacctccccctgaacctgtgatctccttatttgctatcggcaaactctgcagg
tatggctttgacagggagcgtagcaagcaggcactggaggctggtggaggagactttggg
gcaacactggaacagctcctccaccaggtgttcagtgagcgctacggccagaaagccatt
tcccctgatggcctcagcggggtgcctatggatgagtgcttgagccagaggcaagaggaa
gctctggcgctcgctgccatttatggtgagcgcttcaatgagcgcatcgctaacacagtt
tggacaataaccctggacctcttattcctcgcagaggggaacaagagtggtggtgtagtc
gggagtcgatacggagaacgacccgttaacatccgtgatgtctgccgattctacctaaaa
gggcaaggctgtcggtttgggaacaaatgcaagttcaaacaccaaatgcccaccgaaggg
aggtctggggctggttccccagacctgacgggccccagccagcctgggatcaacagttat
tctcctcctgagtatgaactagagattcgattccccaaaggaaaccgttacccatttcag
gcgccaatagtagccttcagcaccaatgatgagtccatgggagctgcaggcaggctcagc
atgaccgaaagattgtttggagaggcgctggctgcggcaaagagcaacgaacctgttgtt
tacactctcaccactatgtgtgaggatgaaactaccatgaaggaactgttggccgtcagt
catcacaaatacagcacgccgccgcctgttgtggcgcctcctcccccctctctttccata
gcaaagagtaagagcgtgaggagcagtgcttctgaggaaagcaggagtagtagcaccagc
agtagtaattacaccaacagcagaaggactgctccgtcttacagccagagacacttaact
ttcaaagagacggaagaggcagaggagctggatgagagggacgaggaggtcgacgatgac
gctgttccagttgagagcgagagttacgtcaatctgaagaagaggatggcaaataggcac
aacatgaagatagaaaacctactgcaagaaaatggcaagctgtgtcgagagtttcagagg
aaacagtcatctaggcgtttcaagtccatgctggaacagaggaggaagctgcctgcttgg
caagaacaagacaacatcttggacctgttggaccggtgtcaggtgctggtggtcagcggg
atgactggatgtggtaagacaacccagatcccacagttcattctggatgcctctttaaat
ggtccggccaatcaggtggccaacatcatctgcacccagccgcgccgcatctctgccatc
tctgtggctcagagggtagcacaggagcgtgcagagtgtctgggcaactcagtgggctac
cagatccgcctggagagtgtcaggacgtcggccaccagactactgtactgcaccacgggg
gtgttactgaggagactggagggcgaggtagacctcaaaggcgtcacacacgtcattgtg
gatgaggtgcacgagcgcacagaggagagtgacttcctcctgttggtgctcaaagacctg
attacacagaggccagacatgaagattattctaatgagtgccacactgaatgccaacctc
ttctctgaatatttctacaactgtcccactgtccacataccaggccgtacattccccgtc
gaccagtttttcctggaagatgccatcaccaaaacaaactatgtgattgaggatggcagc
ccttacatgcgctcagggaagcagaactcgtcctccacaagtgggcgagggagcaaagga
gggtcgagggatgtggtggacgacttgggtgacgacatgtggaacttcatgtcgttctct
aaaaaggacttggtcaaagactccatccctgaccagcagctcagcttccaggacctcacg
gtcagatacaaagatacgaagaagtctgcactgaagaccatggctgcgatggacctggac
aagattaacatggatctggtggagagtgtactggagtggattgtagatggaaagcacaat
taccccccaggtgcagtgctggtgtttttgccaggcctcgctgaaatcaaaatgctgtac
gagcagctgaagtccaacagaatgttcaacaacaggggagcaagcaggtgtgtggtgtac
ccactccactcaaccttgtccaatgaggagcagcaggcagttttcagccggcccccagag
ggtgtcaccaagatcatcatctccaccaatatcgctgagacctcggtaaccattgacgac
gtggtatatgtcattgactctggcaagatgaaggagaaaaggtacgatgcgtctaaaagc
atggagagtctggaggactcgtgggtctctcgggccaacgcgctgcagaggaagggccga
gcgggccgcgtggcctcgggagtctgtttccacctcttcaccagccactgcttccaacac
cagctgcctgagcaacagctgcctgagatccagagagtgcctcttgagcagctctgcctc
cgaataaagatcctggacgtgttttccgagcagatgcttgagtccgtcttctctcgcctc
atcgagcccccggctatgggcagcctggacgcagccaagcagcgcctgcaggacctggga
gctctaactgcagatgagaggctgaccccgctgggctaccacctggcctgcctgcctgtg
gacgtgcgcattggcaaactcatgctgttcggcgccatcttccgctgcctcgacccagca
ctcaccatcgccgccagtctggccttcaaatcaccatttgtgtctccatgggataaacgt
gaggaagcgaatgaaaagaaactggcctttgcactggccagtagtgaccatctagctttg
ttacaggcatacaagggatggtgcagtgccgcaaagaatggccaccaggctggcttcctt
tactgcagggagaactttctgtcttggagaggcttgcaggagatcgctagtctgaagagg
cagtttgctgagctgctgtctgacattggcttcatcaaagaaggactgagggccagggtt
atagagcgtatgtcctctaagggcactgatggtgttctcgaggctactggccctgaggcg
aatctgaactcggacaacatccgactgatgtctgccatgctgtgtgctgccctctatccc
aatgtggtccaagtacgagctcctcaggggaattacaagatgaccagcaaaggagcgatg
aagatgcaacccaaagccaacgagctccgattcatgaccaaggatgacggttgcgtgcac
gtgcatccctcatctgtcaactacacggttcgccactacaacagcccgtacctggtttac
cacgagaaggtgaaaacgagccgtattttcatcagggactgcagcatggtgtctgtttac
cctctggtactgtttggaggcggtcaggttaatgtggagctgcacaaaggggactttgtc
atctcccttgatgacggctggatccgcttcgctgctgcttctcatcaggtggctgagctg
gtgaaggagctgcgctgggagctggaccagctgctggaggataaaatcaggaacccaagc
atggacctgtgcagctgcccccgcggttcccgcatcatccatatgatagtccacctcatc
acgacacagtag
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