Scomber japonicus (chub mackerel): 128353095
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Entry
128353095 CDS
T09718
Symbol
col7a1l
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VII) chain
Organism
sjo
Scomber japonicus (chub mackerel)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
fn3
VWA_2
Kunitz_BPTI
Copine
Motif
Other DBs
NCBI-GeneID:
128353095
NCBI-ProteinID:
XP_053169759
LinkDB
All DBs
Position
23:15165252..15219679
Genome browser
AA seq
3024 aa
AA seq
DB search
MGRSSVWIFLLSLSLSHQSVTAQAEACRTVVQADIVFLVDESWSVGQTSFSSVKDFISAI
VSSFQNSVVGNEGVRFGVTVFGDVSRMRIALTDYSSLDEVLRAIRDIRYEGGSKRIGNAL
HFLVNPVFSPVISRDYAPKIAVLITNGRSDDQVDAAARAVADNGISLFAVGVRGADESEL
RRIVSEPYEEHLLMGADFTLLETILPKLSRRVCFTASEPPRPVKTSQPVEQRVVGPRDLQ
VSELGHNSLRLTWSQATGDVTGYRLLVTPLNSKGHQRPQQQSQIDLKADVSTAVVTEMSP
KTDYSLTVYAIYPSLIGDSATITVKTTPLPQVSNFRVIEEGLFSLRLGWTPPLGKLNGFK
IFIPRSNRPGFTYEQLLPGDTSSHVIDSLEEDKKYTISIYAVYPQGPNEPVSIVGKTLKL
VPVQQFLVQNATTDTLQARWSSVKGATGYRLTWAAPDGHIENINLGDNYNFYMIQGLHLG
SEYTVTINPIFGDIEGPITTTNVKTLETSAVQTLKVSAVSTNTAVISWNSVPGATGYRLA
WGPTTEFVGRDRPRQLALNGSTTEYQMKNVAHDTEYVLTLYVLFGSVVGPGIPATFRTSP
LGYVSNFKVTSYTSTSIDVEWSPIVGATEYKLSWNTDDSSPQSRYLDRNVLFHRIEDLNP
QSTYTITICAVYGNSEGPEISLSQLTATASDSAPIQAVREVKVVDIGVNSFTLSWRKTPG
ATGYKISWTPFLGGDEKSHVVPAATTTFAIKNLRESSAYKIQVSSMLGNREGSPALVTVR
TLDLPKVNGFAALNTTDSSTVLNWTRVAGVSGYRLSWRHISVLDTKTETLGPGFSSYKIN
DLLYGRTYIFTIRPLYGEVEGPISTVYQRILGQDPPVVKVHTVQATVAPHSLRITTASQT
VSITNTSIAHTATRTTRHPIAVPSPKTTKKPPGQPSVTKAKTAAVTSLRLTTFSTETTAP
PIPVCGKAKADIVFLVDESSSIGANNFNKIKDFIFRVTTYFPAIGPQDTQIAVVHYSDEP
RIEFRLNDYKDRNSVLRALRGLRYVGGNTKTGKGISYVLQELFQESLGMRQDKSHVLVLI
TDGRAQDNVLPPSRIARALGVSVLAVGVSNADMEELNKIAAPTTYKNIFYSPTFEDFPSV
EREFINSICSEELLSEYKLHDEDTQLDTPTEDPEELLKPQGPCSSQCGKGQKGEKGDGFG
IGGLRFRQSPGQFDPFTSSKGEKGERGPPGTDGVPGLPGRPGRTGPTGSAGQRGPPGIAG
DMGLPGLTGPKGQRGERGEPGYVIAGTDANFVPGRKGEPGSSGPQGPAGVPGVNGAPGLP
GQQGPSGLPGISVKGDHGEPGAKGLRGKQGLKGDKGESGRDGIAGLPGPIGIDGVPGLPG
QKGNKGEEGIGIQGIQGPRGALGEKGDMGLTGPLGLKGERGEQGIQGVIGPRGKKGFKGE
QGDKGERGEMGPIGPYGSTGVMGPMGLKGDEGPRGVPGDPAKGIIGPTGKKGARGDVGPV
GPTGPQGIKGEQGSKGEKGSPGFGIPGQRGPKGENGERGNVGLSGKPGPKGQDGFKGDKG
SIGLPGNGGEPGLRGKDGAPGTKGDQGIKGEQGSPGEPGDRGIRGPLGLPGRPGDPGEKG
DTGNIGSSGPDGKKGDKGEPGKPGPPGEQIVADNNILTRVIKGEQGEPGQPGLRGETGLP
GPRGPEGKPGLPGPSLGGSGISGLDGLPGKPGVKGEEGQKGEIGLTGDKGDQGRVGIAGM
PGLPGTPGRPGVDGKRGLQGKDGERGQNGDDGKKGDKGDAGADGKDGSKGEPGPPGLPGR
QVLVTTESATIDEIREAFPMPMGPPGATGAPGMKGDKGERGLQGEKGENGAPGKSIDMKG
IEEMFEAYGIRLPLLKALIDRLLQDGIEEVLHVLGTSKKTKENTETHTSNIITKYTVSGC
VIXTVKFDLPNRPXSDLDTIKDPELDGQLSESLKVDPLNETAEGPILRRVTTLNREQKSG
RTEAKLKASEGKEIVDGGGSETSSLKMNATVLNSTFNYTSTQETVSGLPETVVETVLLTQ
EDSLKKNSGQKKKNRERGKGKGNKGRHKRQRQRLTREEDEQAEDNEEEFYNGEEYSYEYE
EEHSTSHNPVQSEALAEISIHPLTSLSAGDINSQDEVSLPIPPTTTTEGADKYLSSGAQG
YNSWNMKKQGNPDLQTNTKSGSQQQRWRQRYSDIEKEIDPETQGGEVEQGRIEEVEGREV
EKEEGVEPDGFKESGPDPVYGEEEMSGDYDWETDEDIDQEREGEEEELERERERERLAME
RERTEQEGERDLEKEREEWERRRAEMERGQGGHYDEETGQPYPYPPEYFNLKGQPGENGK
RGQKGEIGEKGQKGEPGIGHRGPEGQAGPPGQKGEPGNSGPPGAQGIQGIRGNPGFQGIP
GVRGLHGDPGNPGREGERGKRGKNGSPGASGPRGALGPQGPPGVSGVKGEKGDSIPGEPG
GRGLSGFPGRRGDTGTPGVKGTPGNIGPKGLRGNKGEKGDRGLPGVRGERGSVLQMQGPR
GFKGSKGDSGERGLPGFDGDKGEKGEDGPPGFKGVKGDAGTKGALGRFGARGPVGQKGDP
GEPGLNGVMGRNGDHGVDGTKGEKGDIGLEGQKGNQGDSGEPGLPGAKGEKGEKGFRGLP
GRIGSPGLDGDKGDTGLSGTPGIPGLNGLTGRKGDKGVGGTNGVDGEPGEKGDKGTAGFP
GFPGFKGSAGILGRDGDEGPPGSPGPRGDTGPKGDRGRRGRPKPCQRGLPGTPGKRGENG
ALGIDGAKGAKGEPGLSADKVKELVTKEMAEKCGLEYKLMVKSEDTNGTTTVTNDKKGAK
DVVTSVSHDLHEEEVEDEGEEVEEEEYGEMTSPAPVILGEKGTPPNRTDSLEEGTIKLGQ
RKKRRVFGTNTAVSGTDRCLEPMSEGACSDYVLLWYFHHHSGECRPFVYGGCGGNQNQFS
SRQECQSWCKMEKKGGVMGQAGSQMRGQQGPSVGDHAGTVLEGSPSDRRSSSRGFLRGCW
CGGSTRSVTCENTRHSSHSQVVIG
NT seq
9075 nt
NT seq
+upstream
nt +downstream
nt
atgggccgctcttctgtttggatctttctgctgtccctttctctctcccatcaaagtgtc
acagcacaagctgaagcatgcaggacggtggtgcaggcagacatagtgtttctggtggat
gagtcatggagtgtgggccagaccagcttctccagtgttaaagacttcatctcagccatc
gtctcttccttccagaacagtgtagtgggaaatgaaggggttcgctttggagtcactgtt
tttggggatgtctcaaggatgcggattgctttgacagactacagctcactggatgaggtg
ctcagagccatcagagacattcgctatgaaggtggatccaagaggattggcaatgccctc
cattttctggtcaatcctgttttcagccctgtcatcagtcgagactatgccccaaagatt
gctgttttgatcacaaatggacgttcagacgaccaggtggatgctgcagccagagctgta
gctgacaatgggatttctctcttcgcagtaggtgtcaggggagctgacgaatcagagctg
aggagaattgtgtcagagccatatgaggagcatctattgatgggtgctgacttcactctc
ctggaaaccatcctccccaaattgtcccgcagagtgtgttttactgcctctgaaccacca
cggcctgtgaaaacctcccagcctgttgaacagcgtgtggtgggtcccagagacctgcag
gtcagtgagttgggccacaattccctcagactgacatggagccaggccacaggtgatgtc
actggatatcgactcctggtcacccctctcaactccaaaggacatcagagaccccaacaa
cagagtcagattgatctgaaggcagatgtgagcacagcggtagtgacagagatgagtcct
aaaacagactattccctcactgtctatgccatctacccaagcctcattggagactctgcg
acaatcactgtcaagacaacccctctaccacaggtgtcaaacttccgtgttattgaggag
ggtctgttctctctgcgtctgggctggacccctcctctaggaaagctcaatggattcaag
atcttcatcccaagatccaaccgaccaggctttacttatgagcagctgcttcctggagac
acttcttctcatgtgattgacagcctggaggaggataagaagtacaccatcagtatttat
gctgtttacccccagggaccaaatgagccagtttcaatagtgggcaagacgttaaaactg
gtaccagttcagcagttccttgtccagaacgccactacagacactctccaggcgaggtgg
tcatcagttaaaggtgctacaggataccgtctgacatgggcggccccagatggccacata
gaaaacataaatctcggggacaactataatttctacatgatccagggcctccacctaggc
tcagaatacactgtcacaattaaccccatcttcggagacatcgaggggcccatcacgacc
accaacgtcaagacattggaaaccagtgctgtacaaactctgaaggtatctgctgtgagc
accaacactgctgtcatctcatggaacagtgtcccaggggccacaggatacagactagcc
tggggacccaccacagagtttgtcggtcgagatcgtcccagacagttggctctgaatggc
agcaccacagagtaccagatgaagaatgtagcccatgatactgagtatgtcctgactctc
tatgtgctgtttggatccgtggttgggcctggcatccctgctaccttccgaacttctcca
ttgggctatgtgtccaacttcaaggtgacatcctacaccagtacctccatagatgtggag
tggagtcccatcgttggagcaactgagtacaaactctcctggaacacagatgatagcagc
ccccagtcccgttacctggaccgcaatgttcttttccatcgtattgaagacctgaaccca
cagtcaacctacactatcaccatctgtgcagtatacggcaactcagagggaccagaaatc
tctttatctcagctcacagctactgcctcagactcagcaccaatccaggcagtgagggag
gtgaaggttgtggacattggagtcaactccttcaccctatcctggaggaaaacaccaggg
gcaactggttacaaaatctcctggacacccttcctaggtggtgatgagaagtcccacgtg
gttcctgctgctaccaccacatttgctattaagaatctgcgtgagagctcagcttacaaa
atccaggtgtcctcgatgttgggcaacagggaaggaagccctgccctggtcactgtacgc
accttggatcttcccaaagtgaatggctttgctgctctgaacactacagacagcagcact
gttctgaactggactcgtgttgcaggcgtctctggatatcgtctttcctggaggcacatc
tcagtgttggacactaaaacagagactctgggccctggtttctcctcctataagatcaat
gatcttctctatgggagaacgtatattttcaccatcaggcctttgtatggagaagtggag
gggccaataagcactgtgtaccagagaatattgggacaggatcctccagtggtaaaagtc
catactgtgcaagccacagtggccccccattcccttcgtatcacgactgcctcacagact
gtctccattaccaacacttccatcgctcacacggccaccaggaccacccggcaccccatt
gctgtgccgtcgcctaaaaccactaaaaagcctccaggtcagccaagtgtcactaaagct
aaaactgcagcagtcacctccctgcgattaaccacgttcagcacagagacaacagctcca
ccaataccagtgtgtggtaaggccaaagcagacatagtattcttagtggatgagtcctcg
agcattggtgctaacaactttaacaagataaaggactttatattccgagtgaccacctac
ttccctgccattggtcctcaggacacacagatagccgtggttcattacagcgatgagcct
cgaattgaattccgtctgaatgactacaaagacagaaactctgtgcttagggcgctcaga
ggcctacgttatgtagggggcaacaccaagacaggaaaaggcatcagttacgtcctccag
gaactgtttcaggagtctctggggatgaggcaagataagtctcatgtcctggtcctgatt
acagatggcagggcacaggataatgtgctgccaccctccagaattgcacgtgcactgggt
gtcagtgtcctggcagttggagtttctaatgcagacatggaggagctgaataaaatagca
gctcccaccacctacaagaatatcttctactcaccgacctttgaggactttccatctgta
gagagagaatttatcaacagtatctgtagtgaggaactcctctcagagtacaaactacat
gatgaggatactcagctggacaccccaactgaagacccagaggagctgcttaagcctcag
ggtccctgctcttcccagtgtgggaagggtcagaaaggtgaaaagggagatggttttggc
attggaggtctgagatttaggcaaagcccaggacagtttgaccctttcacttcttccaaa
ggagagaagggagagcggggacctcctggaacagatggtgttcctgggttgcctggacga
ccagggagaactggacccactggttctgctgggcagcggggccctccaggcattgcaggt
gacatgggtctccctggactcactggtccaaagggccaaagaggagagagaggagagcct
ggatatgttatagcaggcacagatgcaaatttcgtccctggacgaaaaggagaaccaggg
tcttcaggtccccaggggccagctggtgtaccaggggtcaatggagctccaggcctacct
ggtcagcaaggtccatcaggattaccaggaatatctgtcaagggagatcatggtgaacca
ggagcaaaaggtttacgtgggaagcagggtttgaaaggagacaaaggagagtctggaaga
gatggcattgcaggtttgcctggtccaatcggcattgatggggtgccaggattaccaggt
cagaaaggaaacaagggtgaagaaggaatcggtatacaaggtattcaaggtcctcgagga
gcgctgggagagaagggagatatgggtttaacaggaccactcggcctaaagggtgagcga
ggagaacagggcatccaaggagtcatcggtcctcggggaaagaagggattcaaaggggaa
caaggggacaagggagaacgaggagaaatgggacctataggaccatacggatccacaggg
gtgatggggccaatggggttaaaaggagatgaaggcccaagaggagtccctggagatcct
gccaagggtattattggcccaactggaaaaaagggtgccaggggagatgttggtccagtc
ggtcctacgggtccacaaggaataaagggtgaacaaggatccaaaggagaaaagggcagt
cctggttttgggattcctgggcagcgaggaccaaagggagaaaatggcgagaggggaaat
gttggtttgtctggaaaaccaggaccaaaggggcaggatggctttaaaggtgacaaaggg
agtattggtttacccggcaatggtggagaaccaggattaagaggtaaagatggtgcacct
ggaactaaaggagaccaaggaataaagggtgaacaaggatcacctggagaacctggtgac
agaggaattaggggtccactgggtttgccgggacgaccaggggaccctggagagaaagga
gatactgggaatattggctcgtctggacctgatggaaagaaaggcgataaaggagagcca
ggaaaacctggacctccgggagagcaaattgttgcagacaacaacatactgaccagagtc
attaagggtgaacaaggagagccaggtcagcctggtttgagaggagaaacaggtctgcct
ggaccaagaggtccagagggtaaaccaggattaccagggccatctctgggtggttcggga
ataagtggacttgatggtttaccagggaaaccgggagtaaagggtgaagaaggacaaaag
ggagagattggtttgacaggagacaaaggagatcaaggccgtgttgggattgcaggaatg
cctggtttaccgggaactccagggagacctggtgttgatgggaagagaggacttcaagga
aaagatggagaaagaggacaaaacggagatgatggcaagaagggggataagggagatgca
ggtgcagatggtaaagatggtagtaagggggaaccaggaccaccaggtttgcctggtcgg
caagtgcttgtcactacagagagcgcaactattgacgaaattcgagaagcatttccaatg
ccaatgggtcctcccggagctactggtgcaccaggaatgaagggtgataaaggagaaaga
ggcctgcaaggagagaagggtgaaaatggagcccctggaaaatctattgatatgaagggc
attgaagagatgtttgaagcctacggcatcaggctgcctttgctgaaggctctgattgac
aggctgctacaggatggaatagaggaggtgcttcatgtgctcggcacctccaaaaaaaca
aaggaaaacactgaaactcacacatccaacatcatcactaagtatacagtatctggttgt
gttatttgaacagttaagtttgaccttccaaacaggcctntgtcagacctggacaccatt
aaggaccctgagttagacggacagctttcagaatctttaaaagttgaccctttgaatgaa
actgcagagggtcctatattacggagagtcaccacactgaacagagagcagaagtctggc
aggactgaggccaagttgaaggcatctgaagggaaggagattgtagacgggggcggcagc
gaaacatcttcactcaaaatgaatgcgactgtactcaactctactttcaattatacatca
acccaggagacggtttcagggttaccagaaactgtggtggagactgttctcctcactcag
gaggactctctgaagaaaaattcaggacaaaagaaaaagaacagggaacgtgggaagggc
aaaggaaataaaggacgacataagaggcagagacaacgcctgacaagggaagaggatgag
caagcggaagataatgaagaggagttttataatggcgaagaatacagttatgagtatgag
gaggaacactcaacatcacacaatcccgtccaatcagaagcgttggcagagatctccatt
catcctctgacgtccctctcagccggagacataaattcacaggatgaagtgtcactgcct
atacctcccaccaccacaacagaaggagcagacaagtatttgtcctctggagctcaaggt
tacaacagctggaatatgaaaaagcaaggaaaccctgaccttcaaacaaataccaagagt
gggagccaacagcagagatggagacagcgatacagtgatatagaaaaagagattgatcca
gaaacgcagggtggagaagtggaacagggtagaattgaagaagtagaggggagggaagtg
gagaaagaggaaggagtagaaccagatggatttaaagaatcaggccctgatccagtttat
ggcgaggaggagatgagcggggactatgactgggagacagatgaggacatagatcaagag
agggaaggggaggaggaggagctagagagggagagagagagggagagattagcgatggag
agggagaggacagagcaggagggggaaagagacttggagaaggagagggaagaatgggag
aggaggagggcggagatggagagggggcagggggggcattatgatgaagaaactgggcag
ccatacccatatcctccagagtattttaacctcaagggacaaccaggtgagaatggaaaa
cgaggacaaaagggtgaaattggcgaaaaagggcaaaagggagagccaggcattggtcac
agagggccagaaggccaggctggtcctccaggccagaagggtgaaccaggcaattcaggg
cctccaggtgctcagggcatccaaggtatccgtggtaaccctggcttccagggtatccca
ggagttaggggtctccatggtgacccaggaaatccaggtagagagggagagaggggtaaa
cgaggtaaaaacggatcaccaggagcctctggacctcgaggagcactaggacctcagggt
cctcctggtgtgtccggagtaaaaggagaaaagggtgacagtattccaggagagcctggg
ggcagagggttgtctggcttccctgggagaagaggtgatacagggactccgggtgttaaa
ggaactccaggaaatattggtccgaaaggcttgcgtggcaacaaaggtgaaaagggtgac
cgtgggttacctggagtcagaggagaacggggaagtgtgcttcaaatgcaagggcctcgt
ggatttaagggttccaaaggggattcgggtgagcgaggcctaccgggttttgatggagat
aaaggagaaaagggtgaagatggtccccctggattcaagggcgttaaaggtgatgccggg
actaagggtgcgttgggacgatttggggcacgaggaccagtaggccagaagggagatcca
ggcgagccaggactcaatggagtaatgggtcgcaacggggatcatggagtagatggaacc
aaaggggagaaaggagacataggactggaaggccagaagggcaatcagggtgactcaggg
gagccaggcttaccaggagccaaaggggagaagggagagaagggattcagaggtttacca
ggtcgcattgggagtccaggtctggatggagataagggagatacaggcttatctggaacc
cctggcatacctggacttaatggactcacagggcgcaagggtgacaaaggagtaggaggg
actaatggtgttgatggagagccaggagagaaaggggataagggtacagcaggtttccca
ggtttcccaggctttaaggggtcagcagggattctaggaagggatggggatgaaggacca
ccgggatccccagggccccgtggggacacaggaccaaagggagacaggggcagaagaggg
agaccgaaaccatgtcagaggggactacctggcactcctggaaaaagaggagagaatggt
gcattggggattgatggagcaaagggggctaagggagagcctggactctcagctgacaaa
gtgaaggagctggtcaccaaggagatggcagaaaaatgtgggttggagtacaagttaatg
gtaaagtctgaggatacaaatggaacaaccacggtgaccaatgataaaaaaggggcaaaa
gatgtagtaacatcagtttctcatgacctccatgaggaagaggtggaagatgaaggtgaa
gaagtggaagaggaagaatatggagaaatgaccagtcctgctcctgtgatcctgggagaa
aaagggaccccaccaaaccgcactgactctcttgaggaagggactataaagttgggccag
aggaaaaaaagaagggtttttggcacaaacactgctgtttcagggacagaccgctgcctg
gagcccatgtcagaaggggcctgctcagactatgttctactctggtactttcaccatcac
tctggggagtgcaggccatttgtgtatgggggctgtggaggcaaccaaaaccaattctcc
tcaagacaagagtgccagagttggtgtaagatggagaaaaaagggggtgttatgggtcag
gctgggagccagatgaggggccaacaggggcccagtgtgggagatcacgcagggactgtt
ttagagggctctccatcagaccgacgcagcagtagcaggggattcctgcgtgggtgttgg
tgtgggggcagcacgcgcagtgtgacatgtgaaaacacacgacacagctcacattctcaa
gttgtcattggttga
DBGET
integrated database retrieval system
