Scomber japonicus (chub mackerel): 128353109
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Entry
128353109 CDS
T09718
Symbol
lamb1b
Name
(RefSeq) laminin subunit beta-1b
KO
K05636
laminin, beta 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04510
Focal adhesion
sjo04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128353109 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128353109 (lamb1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
EGF_Teneurin
BLOC1_2
DUF4443
Motif
Other DBs
NCBI-GeneID:
128353109
NCBI-ProteinID:
XP_053169771
LinkDB
All DBs
Position
23:complement(20077164..20116646)
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AA seq
1803 aa
AA seq
DB search
MRFRDWLQDPLTQPQQAVNALRLEMSLLIHILATLALWCPVRALLPEFGDVCTEGSCYPA
TGDLLIGRAHKLVASSTCGLERPERFCIVGHLEEEKKCFVCDSRRMFDEQNNHSHTIENV
VTTFAANRLKTWWQSESGVENVTVQLDLEAEFHFTHLIMTFKTFRPASMVIERSMDFGRT
WQVYRYFAYDCEASFPGVSTGPMVKVDDIMCDSRYSDIEPSAEGEVIFRVLDPAFEIEDP
YSLRIQNLLKITNIRVKFIKLHTLGDNLLDSRDEVTEKYYYALYDMVVRGNCFCYGHASE
CAPMDGAPLGYEGMVHGRCVCNHNTEGLNCERCQDFYQDLPWRPAEGRNTHSCKKCECNH
HSTSCHFDLAVYMSTGNVSGGVCDDCQHNTIGRQCEQCGPFFYQHPNRDLRDPSVCEPCN
CDPAGSQRGGICDARTDVAAGLISGQCRCKDNVEGERCDHCRQGHYGLGEGPQGCLPCTC
NPLGTLPGGNSCDSGTGRCFCKRLVDGHNCDECRPQHWGLSNDMDGCRPCDCDQGGAVNN
NCDPHSGQCVCRERMFGRRCDQVESGFYFITLDHYTYEAEDAKHGPGVTVVPRPYPLDRS
PTWTGMGFVNVPEGAYLEFTISNIPESMDYDMLIRYEPQLPEQWEQVKVQVERPLVDPPN
YSSHCGNAIQSGDEQSVSLPPGSRHVLLVRPVCFEKGLNYTVRLSLPLYSSVSDHQSPYT
LIDSLVLMPRIRELDMFHGIEGEGAWDTFQRYRCLETSQSVVKSPLTDICNDYIFSVSAL
LHKGAMACQCDPQGSLSTICESSGGQCQCRPNVVGRNCDHCAPATFLFSPAGCRHCDCDP
RGAVNSFCHEATGQCDCVTGATGRQCAHCLPGFWGFPQCRPCHCNGHSEYCHPQTGECQG
CRDFTTGHHCERCLDGYHGDPELGSDSHCRPCMCPDGPRSGRQFSDSCYLLGNTNQLVCV
CSPGYKGARCDECSPGYFGNPLVPGGRCTPCQCNNNIDMHDPRSCDARTGACLACLYHTE
GYACQHCKLGYYGNAAAQSCRKCMCYSMGTVRQACSSPDECQCDRYSGQCHCQPNVVGQN
CDRCAPDTWNIASGTGCQRCDCDPVHSFGSSCDVVTGHCMCKPGFGGKTCRECKELFWGD
PEVKCHACDCDPRGISSQQCHPATGQCTCKEGMSGMRCDKCARGYHGEFPACEPCHQCFS
IWDTVVGELKNQTERLEAKVTELQTTGVTAPYKDLVNSLERNAKAVRDIVESNPAAMKLE
QIQELMHQITGVMSYLNGKLNTTEEALNLLHKDSNATDANLDEMMEEAKQLEQNVQEMRQ
QVFNAKNANLQGAMDTIAAAHAQSVTAELRANLSTSNPGNLVSQSAEVRKATEDKLSKSQ
KEFDRKHQRHNQKLDKLGNELDKFNLTPLSEKTCGAAADDESCSSSLCGGLGCVGEDGAP
KCGGEGCSGIVTTSETALKSAKDLDQEILSAMQEVDKLSRMVWEASTRANEAKANAQEVL
IKSNRSKERVEQSNEQLRDLIKEIRDLLTNDKANVSVIEAVANEVLALEMPTSTEKLQEL
TKEIREKVSTLTSVETILIQSADDIHAAETLLKQAKAASEQASNMKDTADIVMAALNETE
RAQSIAMDAIEMALNNTRGTQDLLVSVESETAESELKLSNTTGRLLMLEREVGLLRQNNL
EVDRLAETADSITEHAKQNADEAQQEFDAEVKDKLQEVEDLVEDKGYSVLKARKRAEELQ
QEAKELLAQSSDKLQRLGDLESSYEANQRILEAKAAELVELEEMVSKILGEISHKVTLYS
TCL
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atgagattcagagattggctacaggacccattgacgcaaccccaacaagctgtcaatgct
ctgcgcctggagatgtcgcttttaatccacattttagcaactttggccttgtggtgtccc
gttagggctctgctgccggagtttggggatgtttgcacggaaggcagctgctatcccgcc
acaggtgacctgctgataggccgcgcgcacaaactcgtcgcctcctccacctgtggcctg
gagcggccggagcgcttctgcattgtcggacatctggaggaggagaagaaatgtttcgtg
tgcgactcccggcggatgttcgacgagcaaaacaaccacagccacaccatcgagaacgtg
gtcaccaccttcgccgccaaccgcctcaagacatggtggcagtcggagagtggtgtggag
aatgtgaccgtccagctggacctagaggccgagtttcatttcactcatcttatcatgact
ttcaagacgttccggccggcttccatggtgatcgagcggtcgatggacttcgggaggacg
tggcaggtttaccgttacttcgcttacgactgcgaggcctctttccccggtgtgtcgacg
ggtccgatggtcaaagtggacgacatcatgtgtgactcacgatactcggacatcgaaccg
tctgcagagggagaggtgatatttcgggtgctggaccccgcctttgagattgaggaccca
tacagcctgaggatacagaacttgctgaagatcacaaacatcagagtcaagttcatcaag
ctccacacgctgggcgacaacctgctcgactcccgcgacgaggtgacggagaagtactac
tacgccctttatgatatggtcgtccgtggcaactgcttctgctacggccacgcctccgag
tgcgccccaatggatggagcacccttaggatacgagggaatggtccatggccgctgtgtg
tgtaatcacaacaccgaaggacttaactgtgaacgctgtcaagacttttaccaggattta
ccctggagacctgcggagggacgaaacacccactcctgcaagaagtgcgagtgtaaccat
cactccacctcgtgtcacttcgacctggccgtgtacatgagcaccgggaacgtgagcgga
ggcgtgtgcgacgactgccagcacaacaccataggccgacagtgcgagcagtgcggccct
ttcttctaccagcaccctaaccgagacctgagggaccccagcgtctgcgaaccgtgtaac
tgtgacccagccgggtctcagcggggggggatatgtgatgcgaggacggacgtggcagcc
gggctgatttcaggccagtgtcggtgcaaagacaacgtggagggagagcgctgcgaccac
tgcagacagggacactacggactgggagagggaccacaaggatgcctaccttgtacctgt
aacccgttgggcacgctgcctggaggaaactcctgtgattcaggcacaggaaggtgcttc
tgcaaacggctggtggacggacataactgcgatgagtgtcggccgcagcactggggtctc
tccaatgacatggatggctgcagaccatgtgactgcgaccagggcggggcggtcaacaat
aactgtgaccctcactcaggacagtgtgtgtgcagggagcgcatgtttggacgacgttgc
gaccaagtcgagtccggcttctacttcatcactctggaccactacacctacgaggccgag
gacgccaagcacggacccggtgtgacggtggtgccgaggccttatcctctggatcggagt
ccgacgtggactggtatgggcttcgttaacgtgccagaaggagcctacttagagttcacc
atcagtaacatccctgagtccatggactatgacatgcttattcgttacgagccgcagctt
cctgagcagtgggagcaggtgaaggtccaagtggagcgtcccctcgttgaccctccgaac
tactccagtcactgtggcaacgccatccagagcggagacgagcagtccgtctctcttcca
cctggatccagacatgtgctgctggtgaggccggtgtgctttgagaaagggctgaactac
acggtgcgtctcagcctgccgctctactcgtctgtcagcgaccaccagagcccgtacaca
ctcatcgactctttggtgctgatgccacggatcagggagctggacatgttccacgggatc
gaaggtgaaggagcgtgggatacgttccagcgctaccgatgtctggagacgagccagagc
gtcgtcaagagccccttgaccgacatctgtaacgactacatcttcagcgtctccgctctg
ctgcacaaaggagccatggcatgtcagtgtgaccctcagggttcactcagcaccatctgt
gagtccagcggagggcagtgtcagtgtcgacccaacgtggtcggcaggaactgcgaccac
tgcgccccggcaacgttcctgttcagccccgccggctgcagacattgtgactgtgatcct
cgaggtgctgtcaactccttctgccacgaggcgaccggtcagtgcgactgcgttaccggg
gcaaccgggcgtcagtgtgcccactgcctgccgggcttctggggcttccctcagtgccga
ccgtgccactgtaacggccacagcgagtactgccaccctcagaccggagagtgccaaggc
tgccgagacttcaccaccggacaccactgtgaaaggtgtctggatggttaccatggtgac
cctgagttgggttcggacagccactgccgcccctgcatgtgccccgacggcccgcgcagt
ggacgccagttttcggacagctgctatctcctgggtaacacaaaccagctggtgtgtgtg
tgcagccctggatacaaaggcgccaggtgtgacgagtgctctcccggttacttcgggaac
cctctggtgcccggcgggcgctgcacaccctgccagtgtaacaacaacatcgacatgcac
gacccgaggtcctgcgatgctcggacgggtgcgtgcctcgcctgcctgtatcacacagag
ggctacgcctgccagcactgcaaactgggttactacggcaacgctgccgcacagagctgc
aggaagtgtatgtgttactcgatgggcacggtgcgtcaggcctgctcctccccagacgaa
tgtcagtgtgaccggtacagcggccagtgtcactgccagcccaacgtggtcggccagaac
tgcgaccgctgcgcccccgatacgtggaacatcgccagcgggacgggctgccagcgctgc
gactgcgacccggtccactccttcggatcctcctgcgatgtggttacaggacattgcatg
tgcaaacctggttttggtggcaagacatgtcgggagtgcaaagagctcttctggggggat
ccagaggttaaatgtcacgcttgtgactgcgatcctcggggaatctccagccagcagtgc
catcctgccaccggacagtgtacctgcaaggagggcatgtccggcatgcgctgcgacaaa
tgcgcccggggttaccatggcgaattccctgcctgcgaaccctgccaccagtgcttctcc
atctgggacactgtggtgggcgagctgaaaaaccaaacagagcgtctggaggccaaagtg
accgagctgcagaccactggggtgacggcgccgtataaagatttagtcaacagcctggag
aggaacgccaaagctgtgagagacatagtagagagcaaccctgcagccatgaagctggag
cagatacaggagctgatgcatcagattacgggtgtgatgtcatacctgaacggaaagctg
aacacgaccgaggaggcgctgaaccttctccacaaggactcgaacgccaccgatgctaac
ttggatgaaatgatggaggaggcgaagcagctggagcagaacgtccaggagatgagacag
caggtgttcaacgccaagaacgccaacctccagggcgccatggataccatcgcagcagca
cacgcacagtccgtgacggcagagctccgcgccaacctctccaccagtaatcccggcaac
ttggtttctcagtcggccgaggtacggaaagccacggaggacaaactgagcaagagtcag
aaggagtttgaccgcaagcaccaaagacacaatcagaaactcgacaagctgggcaacgag
ctggataaattcaacctgacgcctctgagcgagaagacatgcggtgctgcagctgatgat
gagagctgctccagttccctctgcggtgggttgggatgcgtcggcgaggacggagcacct
aagtgtggaggagaaggctgcagcggcatcgtcacaacctccgaaactgctttaaaatca
gccaaagatctggaccaggagatcctctcagcgatgcaggaggtggataaactctccagg
atggtgtgggaagcatccacccgcgccaacgaggccaaggccaacgctcaggaggtgctg
atcaaatccaaccggagcaaagagagagtggagcagagcaacgagcagctccgtgacctc
atcaaagagatacgagacctgctcaccaacgataaggccaacgtgtccgtgatcgaggcg
gtggccaacgaggtgctggctctggagatgccgacctcgacggagaagctgcaggagctg
acgaaggagatcagggagaaagtcagcactctgaccagcgtggagacgatcctcattcag
agcgctgacgacatccacgctgcagagacgctgctcaaacaggccaaagctgccagcgag
caggcgtccaacatgaaggacacagcggacatcgtgatggcggccctgaatgagacggag
cgagctcagagtatcgccatggacgctatcgagatggccctgaacaacacgagaggcacg
caggacctgctggtgtctgtggagtcagagacggccgagtcggagctgaagctgagtaac
accactggtcgcctgctcatgctggagcgggaggtcggcctgctgagacagaacaacctg
gaggtggaccggctggcggagacggccgactcgatcacggagcacgccaagcagaacgca
gacgaggcgcagcaggagtttgacgcggaggtgaaagataaattgcaggaggtggaggac
ctggtggaggataaagggtattcggtgctgaaggcgaggaagagagcggaggagctgcag
caggaagccaaagagctgctggctcagagtagcgacaagctgcagagactcggagattta
gagagctcctacgaggccaaccagcgcatcctggaggccaaagctgccgagctggtcgag
ctggaggaaatggttagtaagatcctgggagagatcagccacaaagtgacgctgtacagc
acctgtctgtga
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integrated database retrieval system