Scomber japonicus (chub mackerel): 128353123
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Entry
128353123 CDS
T09718
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03013
Nucleocytoplasmic transport
sjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128353123 (upf2)
03015 mRNA surveillance pathway
128353123 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128353123 (upf2)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128353123 (upf2)
mRNA cycle factors
P-body specific factors
128353123 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Motif
Other DBs
NCBI-GeneID:
128353123
NCBI-ProteinID:
XP_053169784
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All DBs
Position
23:complement(22646711..22666002)
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AA seq
1045 aa
AA seq
DB search
MTDVCFATVSSMPAERKRSVNMDEKDVCSFSNKEKEKERDGDRRPASARDKPKDEAAKAS
GKKDGGGKEEKRKRLEEEKKKKEEKERRKKEEEKQKAEEEQKKKEEEVKRQQEEEERKLQ
EEEAKRQREEEAALLKEKEEGHQLHQEAWERHHGRKELRSKNQNAHEGRPEEAFFSRLDS
SLKKNTAFVKKLRTLTEQQRDSLSHDFSSLNLSKYIGEAVSSVVEAKLKISDVGCAVHLC
SLFHQRYAEFAPLLLQAWKKHFEARKEEKSPNVSKLRTDLRFIAELTIVGLFTDKEGLSL
IYEQLKNIIGTDRETHTHVSVVISFCKHCGDDIAGLIPRKVKLAAEKFGLTFPPSEIIST
EKQQPFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSY
QKLLANTQSLADLLDENMPDLPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARN
FYENLVDLKAFVPAILFKDNEKSGQGKDKEDAKDSKEGKEGVSTTEELELELEALDIADE
PLEMEGPDEVENEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAA
MDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDF
RFHIRKKDQINIETKNKTVRFIGELAKFKMFTKTDTLHCLKMLLSDFTHHHIEMACTLLE
TCGRFLFRSADSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKR
PPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEVKSYLICCMVNIWNVKYNSIHCVA
NLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAV
IFRTLFSFISFGVNQDGSPSPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIY
FQRYIWWKKSVDVWTKDHPFPIDIDYMISDTLELLRPKMRPSCSLEEATKQVTDLEREVL
VKLGEEQRGESGGRRGGRGQLMYLQ
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtttgttttgctacagttagcagtatgcctgctgaacgcaagcgctcagta
aacatggacgagaaagacgtttgctccttcagcaacaaggagaaggagaaggagagagac
ggcgacagacgacccgcgtccgctcgagacaagccgaaagacgaggccgcaaaagcgagc
ggcaaaaaggacggcggcggcaaggaggagaagagaaagcgcctagaggaggagaagaag
aagaaagaggaaaaggagcggaggaagaaagaggaggagaaacagaaagcggaggaagag
caaaagaagaaagaggaggaggtgaagaggcagcaggaggaggaggagaggaagcttcaa
gaagaggaggcgaaaagacaacgggaggaggaggcggctctgctgaaggaaaaggaggaa
ggccatcagctgcaccaggaggcctgggagcgccatcatggcaggaaggagctccgcagc
aagaaccagaacgcccacgagggtcgacccgaggaggctttcttcagccgactggactcc
agccttaaaaagaacaccgccttcgtcaagaagctccgcacgctcaccgagcagcagcgg
gactcgctctcccacgacttctcctcgctgaacctcagcaagtacatcggcgaggcggtg
agctccgtcgtggaggccaagctgaagatctctgacgtgggctgcgccgtccacctgtgc
tccctcttccaccagcgctacgccgagttcgccccgctgctcctacaggcctggaagaag
cacttcgaagcgaggaaggaggaaaagtcgcccaacgtgagcaagctgcgcacggacctt
cgcttcatcgccgagctcaccatcgtcggcctcttcacggacaaagaagggctctcgctc
atttacgagcagctgaagaacattatcgggaccgaccgcgagacgcacactcacgtctcg
gtggtcatcagcttctgtaagcactgcggtgacgacatcgccggtttgatcccgcgcaag
gtgaagctggccgccgagaagttcggtttgacgttccctccgagcgagatcatcagcacg
gagaagcagcagcctttccagaacctgctgagggaatacttcacgtcgctcaccaaacac
ctgaagaaggaccaccgagagctgcagaacatcgagaggcagaaccggcgtatcttacat
tccaaaggagagctgagtgaagacagacacaagcagtatgaagagttcgccacttcttac
cagaagctgctggccaacactcagtctctggccgacctgctggatgaaaacatgccggac
cttcctcaggacaagaccgtgcaggaggaacacggccccggcatcgacatcttcaccccc
ggtaagcccggtgagtacgacctggagggaggaatctgggaggatgaagacgctcggaac
ttctacgagaacctggtggacctgaaagccttcgtccccgccatcctcttcaaagacaac
gagaagagcggccagggaaaagacaaggaagacgccaaagacagcaaagaggggaaggag
ggagtgagcaccacggaggagctggagctggagctggaggctctggacatcgcagacgag
cctctggagatggagggaccagacgaggtggagaatgaagaactggcaaaaaagctccta
gacgagcaagaacaagaggacgaggaggcgaacaccggctcccacttgaagctgatcgtc
gacgcgttcatccagcagctccccaactgcgtcaacagagacctcatcgacaaggctgcg
atggacttctgcatgaacatgaacaccaaatccaacaggaggaagctggtccgagctctc
ttcaccgttcccaggcagaggttggatcttctgcctttctactctcgtctggtggcgact
cttcatccctgcatgtcagacgtggctgaagacctctgctccatgttgaagggagacttc
aggtttcatattcggaagaaggatcagatcaacatcgaaaccaaaaacaaaaccgtcaga
ttcatcggtgaactggcgaaattcaagatgttcactaagacagacacgctgcactgtctc
aagatgctgctgtctgatttcacccatcaccacatcgagatggcctgcaccctgctggag
acctgcggccgcttcctgttcagatccgccgactctcacctgcgtacaagcgtcctgctg
gagcaaatgatgcgtaaaaagcaggcgcaacatctggacgcccgctacgtgacgatggtg
gagaacgcctactactactgcaacccgccgcccatggagaagacggtgaggaagaagagg
ccgccgctgcaggagtacatccgcaagctgctctacaaggacctgtccaaagtcacaacg
gagaaggtgctcaggcagatgcgtaagcttccctggcaggaccccgaagtgaagagctac
ctgatctgctgcatggtcaacatctggaacgtcaagtacaacagcatccactgtgtggcg
aacctgctggccggactggtggcctaccaggaggacgtgggcatccatgtggtggacgga
gtactggaggatatccgcctgggcatggaggtcaaccagccgaagttcaaccagcggcgg
atcagcagcgctaagttcctgggcgagctctataactaccgcatggtggagtcggccgtc
atcttccgcacgctcttctccttcatctccttcggggtgaaccaagatggcagcccgagc
ccgctggacccccccgagcacctgttccgcatccggctggtctgcaccctgctggacacc
tgcggccagtacttcgaccgaggctccagcaagaggaagctcgactgtttcctcatctac
ttccagcgctacatctggtggaagaagagcgtggacgtgtggaccaaagatcacccgttc
cccatcgacatcgactacatgatcagcgacactctggagctgctgcggcccaagatgagg
cccagctgctccctggaggaggccaccaagcaggtcaccgatctggagagggaggtgctc
gtcaaactaggtgaggagcagcggggggaaagtgggggcaggcggggggggagggggcag
ttaatgtatctccaatga
DBGET
integrated database retrieval system
