Scomber japonicus (chub mackerel): 128353209
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Entry
128353209 CDS
T09718
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03015
mRNA surveillance pathway
sjo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128353209 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
128353209 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128353209 (cpsf6)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
128353209 (cpsf6)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
128353209
NCBI-ProteinID:
XP_053169858
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Position
23:14304847..14319895
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AA seq
588 aa
AA seq
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MADGVDHIDIYADVEEEFNQESDYPVHEQIDLYDDVISPSANNGDAPEDRDYLDTLPAPG
GSEGGKSAPPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAIRSIGITDVLEIKFFENRAN
GQSKGFALVCVGSEASSRKLMELLSKRELHGQNPIVTPCNKQSLSQFEMQSRKSTSGTQS
GQMSGEGKAGPPGAGPRGGFPMGRGRGRFPGPPGPGGDRFPGPVGPGGPPPHFPGSGMRP
DLIRHQDGPLMDMNFSPFPPGGRNGSWRGRGGMQGPPRPPPGPPGPPGPPGPPPPGQGLP
PPLAGPPNRGDRPPPPVLFPGQFGQPPMGPLPPGPPPPGYGPPPGPPPPQQGPPPPGPFP
PRPPGPIGPPMALAPPPHMPGPPPGGPPPAPHVNPAFFPPPGNNNMPPNDSRGPPGPNDP
YGRPPPYERGDYGPGGREMEASRTPLSEAEFEEIMNRNRAISSSAISRAVSDASAADYGS
AIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSASRRERSRERDHSRSR
EKSRRHKSRSRDRHEDYYRERSRERDRHRERDRDRDREREREREYRHR
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggatcacatcgacatctacgccgacgtagaggaggaattcaaccag
gaatctgactatccggttcatgagcagatcgacctgtatgatgatgtaatatccccatca
gccaacaatggtgatgcaccagaagaccgtgactacctggacacactccctgcaccaggt
ggctcagaaggagggaaaagcgccccacccaatgtggtatacacctatacaggcaaaaga
attgctctatacattggaaacctcacatggtggacgacagatgaggacctgacagaagca
atccgatcaataggcatcacagatgtgctggagatcaaattctttgaaaacagagccaat
ggccagtctaaagggtttgctctggtgtgtgtgggctcagaggcatcatccaggaaatta
atggagcttctgtcaaagagggagctccatggtcagaatcccatcgtcacaccatgcaac
aaacagtccctcagccagtttgagatgcagtcacgcaaaagtacgtccggtacccagtca
ggccagatgtctggggaaggtaaagccggtccccctggtgctggccctcgtggaggtttt
cccatgggtagaggcagaggaaggtttcctggaccacctggccctggaggagaccgcttc
cctggtcctgttgggcctggagggccgccaccacacttccctggctcggggatgagacca
gatctgattaggcaccaagatggccctctgatggatatgaatttcagtcccttcccgccg
gggggcaggaacgggagctggcgtggcagaggtgggatgcagggtcccccacgtccccct
cccggtccacctggtccacctggccctccaggacctccaccgcctggtcagggtcttccc
cctccccttgctggtcctccaaatcgcggcgacaggcctcctcccccagttctcttccct
ggtcagtttggccagccaccaatgggacccctgcccccaggcccccctcctccaggttat
ggccctccccctggcccaccacccccacaacagggcccaccacccccaggaccattccct
cctcgtcccccaggccccattgggccccccatggctttggctccacctcctcacatgcca
ggtcccccaccaggtggaccaccaccagcaccccatgtcaatcctgccttcttccctcca
cctggcaacaacaacatgccccccaacgacagtcgaggacccccaggaccaaacgaccca
tatggacgccctccaccctatgagaggggagactacggtcccggaggccgggagatggag
gcgtcacggacccctctgagtgaggcagagtttgaggagatcatgaacaggaacagagcc
atctcctcgagcgccatatctagagctgtgtctgatgccagtgcagctgactatggcagt
gctatagagaccttggtgacagccatcagtctgattaaacagtccaaagtgtcagcagat
gaccgctgcaaggtcctcatcagttctctgcaggactgtcttcatggcatcgaatcaaaa
agctacggctctgcctccaggcgagagcgttccagggaacgtgaccacagccgctcaagg
gaaaagagcagacgccacaagtcccgcagtcgggaccggcatgaagactactaccgagaa
cgcagccgggaacgtgaccgtcaccgtgagagggaccgggaccgagaccgggaaagagag
agggagagagagtacagacaccgctag
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