Scomber japonicus (chub mackerel): 128353428
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Entry
128353428 CDS
T09718
Symbol
dcp1b
Name
(RefSeq) mRNA-decapping enzyme 1B
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128353428 (dcp1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128353428 (dcp1b)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128353428 (dcp1b)
mRNA degradation factors
5'-3' decay
Decapping complex
128353428 (dcp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
WH1
Motif
Other DBs
NCBI-GeneID:
128353428
NCBI-ProteinID:
XP_053170105
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All DBs
Position
23:14197926..14209016
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AA seq
637 aa
AA seq
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MTATSAGSCLAAKGLDISLAALKRQDPYINNIVDVASQVALYTYNNRTNEWEKTEVEGTL
FVYTRLASPRHGFTIMNRLSMENLTEPITKDLDFQLQDPFLLYRNARLVIHGIWFYDKQD
CQRIAQRMRILTQQEQVLAQSQGGWLSPGGGGGVGVGGGERGGGGGGGGGGGGGGGGSEG
KAVDIIQMLTKAHTEYDKEKSTSEPKEIGGSSVLYGNPNLIKPIPVKPNTQDSDSAEPKS
LSLATLFGSQHHHSPKPEPVPPLAAPGSGSLMGKVARPPVARTLTYDTTLGSGRGVAPGC
SDGGNIVSIGLQSSAAAHQQQQHCPAIQKLMHAQRDAGGVVGVLQTVSESPENRLCDNGV
PLEQHHLHHLYHHQQHHHHLHHHQQQQLQPDPIQRLFQSHPPPPTSTSFSAAPPCCSIPP
PLQKNPLLSGQPILVESVPCSHLQAQQSQQLFFSLPKPQSEAQHNNQSASTLQETGLLPS
QVSNDQGLSSHMPGVVSPHELLQKLQLVQQEQNLASQDPPRPCPGLAPRFLGPTQSQGAG
SILGPASNQITAGQKAALQFQVISPQRIPATVAPTMLLSPSVFTQSKSSPQQKEIRVLSK
SQLQATLLHLIQTDSSFLDTIYEAYISRFANDSSSKY
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgacttctgcaggcagctgtctcgctgctaaaggactggacataagtctggca
gctctaaagcgacaagacccatacattaataacattgtggacgtggcaagccaagtcgct
ctgtatacttacaacaacagaacaaatgagtgggaaaagacagaggtggaaggtacccta
tttgtctacacaaggctggcgtctcccagacatggtttcactattatgaacagactcagc
atggagaaccttaccgagccgatcaccaaagacttggacttccaactccaggaccccttc
ctgctttatcgcaatgcacggctggttatccatgggatttggttctacgataagcaggac
tgtcaacgcattgcccagaggatgagaattttgactcagcaggagcaggtcctggctcag
tctcagggtggttggctgtccccaggaggaggaggtggtgtgggtgtaggaggaggagaa
agaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaagtgaaggg
aaggcagtagacatcatccagatgctgaccaaagcacacacagagtatgacaaggagaag
tctacttcagagccaaaggagattggcggcagcagtgttctttatggaaaccccaacctg
atcaaaccaatacctgttaaaccaaacactcaggacagtgacagtgctgagcccaagtct
ctctctctggccactctgtttggctctcagcatcatcactcacctaagcctgagccggtc
cctccattggctgcccctgggtcggggtcattaatggggaaagtagcccgcccgcctgta
gcccgcacactgacctatgataccacattgggatctggccgaggtgttgcaccggggtgt
tcagatggtggaaatattgtttcaatcgggctgcagagttcagctgctgcccatcagcaa
cagcagcactgccccgccatccagaagctcatgcatgcacagagagacgccgggggggtc
gtcggagttcttcagactgtgtccgaatccccagagaacaggctatgtgacaacggggtg
ccactggagcagcatcacctccaccatctttaccatcatcagcagcaccatcatcatctt
catcaccatcaacagcaacagcttcaacccgacccgatccagagacttttccaaagccac
ccacctcctcccacctccacctccttctctgctgcccctccttgttgttccatcccccct
cctctgcagaagaacccccttctctccggccagcccatacttgtggaatctgtgccatgt
tcccaccttcaagcgcaacaaagtcagcagctgttttttagcctacctaagcctcaatca
gaagcccagcacaacaaccaatcagcttcaactttacaggaaacaggtttgctgccatct
caggtgtccaatgaccaagggctgtcttcccatatgccaggtgtggtatcaccccatgaa
ttgcttcaaaagctccagctggtccaacaagagcaaaacctggcttcccaagatccccct
cggccctgcccagggctggcccctcgattcctggggcccactcaaagtcaaggtgcaggc
tcaattttaggtccagcctcaaaccagattacagcaggtcaaaaggctgcgctgcagttt
caggtcatctccccccagcggataccagcaaccgtggccccaaccatgctcctgtctccc
agtgtattcactcagtcgaagtcttctccgcagcagaaggagatcagagttctgtccaaa
agccagctccaagccactctgctacatctgatccagactgacagctcattcctggacacc
atctatgaggcttacatcagccgctttgctaacgactccagcagcaagtactga
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