KEGG   Scomber japonicus (chub mackerel): 128353519
Entry
128353519         CDS       T09718                                 
Symbol
kdm5a
Name
(RefSeq) lysine-specific demethylase 5A isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
sjo  Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:sjo01009]
    128353519 (kdm5a)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sjo03036]
    128353519 (kdm5a)
Enzymes [BR:sjo01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     128353519 (kdm5a)
Protein phosphatases and associated proteins [BR:sjo01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     128353519 (kdm5a)
Chromosome and associated proteins [BR:sjo03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    128353519 (kdm5a)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD zf-C5HC2 PHD_UBR7-like PHD_5 PHD_JHD1 PHD_Pygo GlgE_dom_N_S
Other DBs
NCBI-GeneID: 128353519
NCBI-ProteinID: XP_053170190
LinkDB
Position
23:complement(10632599..10650143)
AA seq 1618 aa
MGFPPGKGTGSLLRSHYERILYPYELFQSGATLTGLHRLYDEGDDEEEIDEGVGEEAVEE
EDQEDEDDKDKERDGEVDSTQTKERLLPERRSRRLKSERENKEPKGLKIFGTSPKMVGLE
IVSADDGFNKKQRHLKAQAFAIKMRPRKETLEVNFIDLYLCLMCGRGDEEDRLLLCDGCD
DSYHTFCLIPPLQDVPKGDWRCPKCVAEECSKPREAFGFEQAVREYSLQSFGEMADHFKS
DYFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISSKEVGSGFPIRDGKRRLLGDE
EEYANSGWNLNNMPVLEQSVLTHINVDISGMKVPWLYVGMCFSSFCWHIEDHWSYSINFL
HWGEPKTWYGVPASAAEQLEAVMKKLAPELFDSQPDLLHQLVTIMNPNVLMEHGVPVYRT
NQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCTADWLPMGRQCVAHYQRLHRYCVFSHEE
LLCKMAADPESLDVELAAAVFKEMGDMMEEETKQRQAVQEMGVLSSEQEVFELVPDDERQ
CHKCKTTCFLSALTCSCSPDRLVCLHHAADLCDCPLGNKCLRYRYDLEEFPSMLYGVKTR
AQSYDTWAKRVTEALAADQKNKKDLIELKVLLEDAEDRKYPENALFRRLREMVKEAETCS
SVAQLLLSRKQRHSSRLRSESSRNRTKLTVDELKAFVDQLYRLPCIISQARQVKELLENV
EDFHERAQVALADEMPDSSKLQALLDLGSGLDVELPELPRLKQELQQARWLDEVRVTLAE
PHRVTLELMKRLIDSGVGLAPHHAVEKAMAELQEILTVSERWEDKARACLQARPRHSMVT
LESIVLEARNIPAYLPNILALREALHKAKEWTAKVEAIQSGSSYAYLEQLESLLARGRSI
PVRLDPLAQVESQVASARAWRERTGRTFLKKNSTYTLLQVLSPRVDIGVYGNSKSKRKRV
KELMEKERGGFDPDTLSDLEESLEEVRDPATVVAAFKSKEQKEVESIHSLRAANLAKMAM
ADRIEEVKFCLCRKTASGFMLQCELCKDWFHGACVPLPKTGSQKKLGVGWQSNSKDSKFL
CPLCQRSRRPRLETILSLLVSLQKLPVRLPEGEALQCLTERAMSWQDRARQALATEELSS
ALAKLSVLSQRMVEQAAREKTEKIINAELQKAAANPDLQGHIQTFQQSGFSRATSPRQSV
DYDDEETDSDEDIRETYGYDMKDPGEVKPYLFCDEEIPVKSEEVVSHMWPAATPSFCAEH
AYSSASKSCVQNLGTPRKQPRKTPLVPRSLEPPVLELSPQAKAQLEELMMLGDLLEVSLD
ETQHIWRILQATHPPSEERFLQVMEPDDSLMEKPLKIKLKDSEKKRKRKLERAEHHHMLM
ATAGGTSPMGEMRPAKSKELKRVGLELGLGVKPKKKKLKLNLEKNREMKQLAKRLAKEEK
ERKRKEKAAAKAEAIREGLEKRKEKKILDIPSKYDWSGAEDSNDENAVCAAKNCQRPCKD
KVDWVQCDGGCDEWFHQVCVGVSCEMAENEDYICMDCSRKVTGASGGMAVEEVAEESVVL
LATSMCGGGVQSLPSAAATVVASWSHAPAAMLLNPATSHHHHHHHQQQQQQQEPQQGS
NT seq 4857 nt   +upstreamnt  +downstreamnt
atgggcttcccacctgggaaaggaaccggctcactactacgttcccactatgagaggatc
ctgtacccctatgaactcttccagtctggagcaactctgactggcctccaccggttgtat
gatgagggagacgatgaggaagaaatagatgagggggttggcgaggaggcggtggaggag
gaagatcaagaggatgaggatgataaggacaaggagagagacggggaggttgattcaacg
caaaccaaagagcggcttctgcctgagagacgctccaggcgtctgaagtctgagagagaa
aacaaggagccaaaaggcctcaagatctttggtacaagtcccaagatggtgggcttggag
attgtgtcagctgatgacggattcaacaagaaacagcgtcacctcaaagcccaggccttc
gccatcaaaatgagaccacgcaaggagaccctggaggtcaactttatcgacctgtacctc
tgtctgatgtgtggacgaggcgatgaggaggaccggctcctgctgtgtgacggctgtgac
gacagctaccacaccttctgcctgatcccacccctgcaggatgtacccaagggggactgg
cgctgccctaagtgtgtcgctgaggaatgcagtaagcccagggaggcatttggctttgag
caggctgtgagggagtattctctccagagctttggagaaatggctgaccacttcaagtcc
gactatttcaacatgcctgttcacatggtccccacagaactggtggagaaagagttctgg
cgtctggtcagcagcatcgaggaggatgtaatcgtagaatacggagctgacatcagctcc
aaggaagtgggcagtggatttcccatcagggatggtaagaggaggctactgggagatgaa
gaggagtacgccaactcgggctggaacctgaacaacatgccagtgctggagcagtcagtg
ctcacccacatcaatgtggacatctcgggtatgaaggtaccctggctgtatgtgggcatg
tgtttctcctcattctgctggcatatcgaggatcactggagctactccatcaatttcctg
cactggggcgagccaaagacctggtacggagtgccggcctcagcagcagagcagctggag
gcggttatgaagaagttggctccagagctgtttgactcccagcctgacctactccatcaa
ctggtcaccatcatgaatcccaatgttctcatggagcatggcgtccctgtgtacaggacc
aatcagtgtgcaggggagtttgtggtgactttccccagggcgtaccacagtggcttcaat
cagggatacaattttgcagaagctgttaacttctgcacagccgactggttacccatgggc
cgtcagtgcgtggcccactaccaacgcctgcaccgctactgcgtcttctcccacgaggag
ctcctgtgcaagatggctgctgatccagagagcctcgacgtggaacttgctgccgctgtt
ttcaaggaaatgggagacatgatggaagaggagacaaaacaacgacaggcggtccaggag
atgggcgtgctgtcctcagagcaggaggtttttgagctggtgcctgacgacgagcgccag
tgccacaagtgtaagacgacctgtttcctgtctgcgctgacgtgctcctgtagccccgac
aggctggtttgtctccaccatgcagcagatctctgtgattgtccacttggcaacaagtgt
ctccggtatcgctatgatctggaggagtttccgtccatgctgtatggagtaaagacacgg
gcacagtcctatgacacctgggcaaagagggtcactgaagccttggctgcagaccagaag
aacaaaaaagatcttattgagctcaaagttttgcttgaggatgcagaggacaggaagtac
cctgagaacgctctgttccgacgccttagggagatggtaaaggaggcggaaacatgttcc
tctgtagcccagctgctgctcagccgcaagcagagacacagcagtcgcctgcgttctgag
agcagtcgtaaccgcaccaaactgacagtggatgagctcaaggccttcgtggaccagctc
tacaggctgccctgcatcatcagccaggcccgacaagtcaaagagttactggagaatgtg
gaggacttccatgagcgtgcccaggtggcgctggcagacgagatgcccgattcctccaag
ctccaggctctgttggatcttggcagtggtttggacgttgagctgccggagcttccccgg
ctcaaacaggagctccagcaggcccgctggctcgatgaggtgcgtgtcaccctggccgag
cctcaccgcgtcaccttggagctgatgaagaggctgatagactccggggtgggcctggct
ccccaccacgctgtggagaaggcgatggctgaactgcaggagatcctcactgtctctgag
agatgggaggataaggctcgtgcttgcctgcaggccaggcctcgccacagcatggtgacg
ttggagagtattgtgctggaggccaggaacattccagcatacttacctaatattttggcc
ctccgagaggccttgcacaaggccaaggagtggactgctaaggtggaggccatccagagt
ggcagtagctacgcttacctggagcagctggaaagcctgctggctcggggtcgttccatc
cctgtccggctagatccgttggcccaggtggagtctcaggtggcctcagcccgagcctgg
agggagaggactggtcgcactttcctcaagaagaactccacgtacacactgctccaggtt
ctcagtcctcgtgtggacatcggggtctacggcaacagcaagagcaagcggaagcgcgtc
aaggagctcatggagaaggagcgaggaggcttcgacccggacacattgagcgacctggaa
gagagcctcgaggaggtgcgagaccccgccaccgttgtagcagccttcaaatccaaagag
caaaaagaagtggagtccatccattcactccgtgctgccaatctggccaagatggccatg
gccgaccgcatcgaggaggtcaagttctgcctgtgtcgaaagacggccagcggtttcatg
ctgcagtgcgaattgtgtaaggactggtttcacggggcatgtgtgcctctgcctaagact
gggtcccagaagaagctgggtgtgggctggcagagcaacagcaaagactccaaattcctg
tgcccgctctgtcagaggtcgaggaggccgagattagaaaccatcctttcgctgctggtg
tcactgcagaagcttccagtgcgtctaccagaaggagaggccctccagtgtttgacagag
agggcaatgagctggcaggacagagcgcgccaggctctggccactgaggagctgtcctca
gccctggcaaagctgtcagtgctgagccagcgtatggtggagcaggctgcgagggagaaa
accgagaagatcatcaatgcggagttgcagaaagccgctgccaaccctgacttgcagggc
cacatccaaacttttcagcagtcaggtttcagcagagccacatcacctcggcagtctgtg
gactacgatgacgaggagaccgactcagacgaggacatcagggagacctatggttacgac
atgaaggacccaggcgaggtgaagccctaccttttctgtgatgaagagatccctgtgaaa
tctgaggaggtggtcagtcacatgtggccggctgccacgccctcattctgcgccgagcac
gcctactcctcagcctccaagtcctgtgtgcaaaacctgggcacgcctagaaagcagccc
aggaagacccccctagtacctcgcagcctggagccgccagtgcttgagctgtccccgcag
gctaaggcccagctggaggaactgatgatgctgggagacctgctggaggtgtccctggat
gagacccagcacatctggagaattctgcaggccacgcaccccccctcagaggagagattc
ctgcaggtcatggagcctgatgactccctaatggagaagcctctaaaaatcaagctgaaa
gattcagagaagaagaggaaacgaaagttagaaagagccgagcaccaccatatgttgatg
gccactgctggtggcacctcaccaatgggagaaatgcgaccggccaagtccaaagaactg
aaaagggtgggcctggagcttggtcttggggtcaaaccgaagaagaagaaactaaaactc
aacctggagaagaaccgtgagatgaagcagctggctaagcggttagccaaggaggagaag
gagagaaagaggaaggagaaggcagccgctaaggccgaggccatcagggagggactggag
aaaaggaaggagaagaagattcttgacattccctccaagtacgactggtccggggctgaa
gactccaatgatgagaatgctgtttgtgcagccaaaaactgccagagaccctgtaaagat
aaggtggactgggtgcaatgcgacggcggctgcgacgagtggttccaccaggtgtgcgtc
ggcgtgtcgtgcgagatggcggagaacgaggattacatctgcatggactgctcccggaag
gtgactggagcgagcggggggatggcggtggaggaagtggcggaggaaagcgtggtgttg
ctggcgacgtcgatgtgcggcggcggcgtgcagagcctgccctcagcggcggcaacggtc
gtggcgtcgtggtctcacgcgccagccgccatgcttctaaacccagcaacttcacatcat
catcatcatcaccatcagcaacagcagcagcagcaagaacctcagcagggcagttag

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