Scomber japonicus (chub mackerel): 128354201
Help
Entry
128354201 CDS
T09718
Symbol
rp1l1a
Name
(RefSeq) retinitis pigmentosa 1-like 1 protein
KO
K19538
retinitis pigmentosa 1
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sjo03037
]
128354201 (rp1l1a)
04812 Cytoskeleton proteins [BR:
sjo04812
]
128354201 (rp1l1a)
Cilium and associated proteins [BR:
sjo03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
128354201 (rp1l1a)
Cytoskeleton proteins [BR:
sjo04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
128354201 (rp1l1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCX
RE_MamI
Motif
Other DBs
NCBI-GeneID:
128354201
NCBI-ProteinID:
XP_053170443
LinkDB
All DBs
Position
24:12892824..12903076
Genome browser
AA seq
2675 aa
AA seq
DB search
MHSVQTGMWDPRSLSKHVSPLPPPPLTNSRLTRVTRATPAKRITFYKSGDNQFGGVRMAI
HRRSFKCFDTLLDDLSQKVPLPFGVRTVTTPRGLHAIKHLEQLQDGGCYLCSDRRHVKPI
NMEMASKRPNIWNNHSRRPQRPEASPTTPPGHLPYRQRRILLVKNSEPGMRRSVVLSRRS
TRSLRAFLDEVSEVMQFHVRKLYTPEGRRIDSVQTLMTSPPILVCVGREAFSPLLVNYVR
KSSEEKLPGLGTRSPGLGPRTPGNGAKSPATQGPRSPPHGAQSRASEYSEGHESKKSVNF
GLETKKSIIHPRSDSSNRSARFSLSSEKSYGNGVSTLSQGRPAIMNDDIEKRVLVNKDGS
LSVEMRVRFRLQNEETLQWSTQIKKSPSLTNDCCPLSQAQPHYLQQGQSESCSDPDSTTF
EPEVVEYSSQPLQHVLEGSGCPCCYQRQEQQYDLWENPAHSHKQRPAAPPHKSSHTHTMM
RHTHSSSSSSSCNSRRVVRCRAQLSNCGGGSGSEQSQLVQEEMCVTERRVEVEQHGDTHV
EVCRVSRCCSRSEVLAIDTNLLPVSRKSVEDELMLEEGDRPLSGISSSSHVLQSLKEDHD
DEDDDLPPSASQCGESNESTPSPISQTGNDRPTGNISAGSVHSTKHKKHKDTEERGSRTV
SAACSCHCGSATPQSTTGADEVDRAPSSKSRTSRASCRSTTARTPNSEEGVADDEDDEVK
KVVSGLSGQTGLSAGSRQSGASSVCHNCGGCQHGVNSSSSSRASQSSHHTNQASPKPGSP
PHDQENANDGSEEDGSDVSAVSTQSNKSNLTNHGRCSQISNVVEGRASRAMSRKSNLEPA
EKEEERPPSATSATSHRSSRSHKSCCNGATDATTEKEEERSPSAMSALSNLSAKSSKSQK
SNKNGTVETLDIKTREEAEGQNVEERAGSSLSAKSCISAKSSASVRSHKSNCPSRIRVAS
PSDNAAVEEDETNNRAPSSLSVKSTKEERPDSVLSAKSAKSTKSNVSGKSSKSHKSTCSH
FVREISPGAEDPIEDATGKEGETEVEDRAASTLSTKSNVSAKSNKSRKSTKDSQRSPSPG
SEAGGDEEERAASQMSARSVKSNISVKSNCNGNEKVAEEAEEEENENVEEETQPRPESVA
SAKSENEERPASAVSCKSKKSLCNSNTDETPEMGDNTGDCDKAEVRAASALSGKSASSAK
SHHTNCSKSSRVASPAKDTSKTEVDRSPSAMSGKSNTSAKSAKSKGSNHTPASPNADEAV
VPSTETNEEEKQDENQERVASAMSVKSKSSVRSGTSHKSNSNQHVKSVSPSSNVVTIKTP
EGVDEEGNKTTERPTSAASAKSGKSIAVIETADADENQEEDNAPKIKSSEHSNGKTLSPR
RTRSPRTRSPKASSPSSPQSSGQQLLPNPGVGETRGPSALSVHSTTSAKSGRSKCHCGKA
KKEKETEVKEVEKKEEDEKLKSEDDKEPSDRAASVLSSSSKKERESGDPEPPLSRNSSGS
VSLGLPEDQETGDSDSGKSNVSFHTGSKESTLSHNLPAVDIPTIETPGGGNNEGEEGEEQ
KTERPASELSAKSSRSHKSSCSCKVKAAARLGTSPTKAGNDLETGSVKSANNLDAVDNRT
PSAMSSASAKVRSKSPANSTNNNAENKASSRPASKTKGKDVTDDAASVCPKSPCCLRPES
AASAKSVSKMKASKQSKQEDPVISEDEVKGDSGSVKSVKPSKPCPSHSSRLSSKVETCSE
STLSHSLSAADLLKETMATTRPYSRQSKASKTSDKPSSEKSGMCQRNKSQMDRKELELTP
AFLPNTSPNEVVSDWLRSIPTNGNLLTLDDELNKEEQEVKEKEEVEEKPGEEVAKEEDSP
DAEKVDEEEEADADEKEEKEEEVECDAAEGEKSADPAPGVAVGTSVRTTNLLLSGDSQPK
NWHSSVAVMKVLLGSSLSRSRSLPEVSPVYGRRLSTSAKGLLDCLAQLQLIEPAVSPGCD
PQKDRKQQYDDIMAILQSLWLTDPKDIEVKKSSSEVTPPRSSSGVGMSSGSGGSGKENVN
QGGDEILPKETESLHEDEGAEKVEEEKEEEENEEAGDQEIEAEAEPESEETKPDTAEESV
QIDEQSITPPSLDSPKATDNPSSSDKSSVNDSSKSPTDNKREQEDSSSGTPPTVVRAPLS
KRLSQDPDPVWVLQLLKKLEKQFMNHYINAMAEFKVRWDLDDSLILDTMISELREEVSRR
IQTSIEREMRKIQSRAGKVGRSPRPPQLGNLSRESTVTDRRRQMLKVMKNQSVNPADTFS
DNDITGEFSDQRSEDEYCPCDACVRKKMAERPFKSNPLASDAPLMMEFDLLKILQLKKSP
SPAPVSSLLVEGESESMVDEEGRNLEVVQEEEEEDETKEDIKAEVVLEETIPEEDEEEMG
DEQEENDGGDEEQEEGETGGEEAAEEGASENGEEEEEEEECPCCCARNEEESDKAEEGDE
EAKEATADEGETTENGEGEEEEGETDLANEESTPVEELVEGNISSSAEDESKGDDGTGED
KSNEDEEGGESEETSQQGETPTVCVTEGEEADPEDSNTGECFVTGDEEEKEGGGNGDEEE
VVEDAVEEFKHKEEEGEEIEGNWEDGALHHQVTRTSMESQPGSMEDIGRDSPQNPVIATE
VPKKAADGSTGGVCQTTSRSPARVKRRKPKESDVA
NT seq
8028 nt
NT seq
+upstream
nt +downstream
nt
atgcattcggtccagacaggcatgtgggacccccggtccctatctaaacatgtctcgccc
ctccccccgccacccctcaccaactcccgcctcacccgcgtaaccagagccaccccggcc
aagcggatcaccttctacaagagtggcgacaatcagttcgggggcgtaaggatggccatc
cacaggcgtagcttcaaatgtttcgacactctgttagatgacctttctcaaaaggtgcca
ctgccatttggtgtgcggactgtgaccactccccgtggcctccatgccatcaaacacttg
gagcagctccaggacggtggctgttacctctgctctgaccggcgccacgttaagccaatc
aacatggagatggccagtaaacgcccaaatatctggaacaaccacagccgtagaccccag
cggcctgaagcctcacccacaacaccacccggccatttgccttacaggcagcggcggatc
cttctggtaaagaacagcgagccagggatgaggaggagtgtggtgttgagcaggaggtca
accaggagtctgagggcatttcttgatgaggtgtccgaagtgatgcagtttcatgtccgc
aagctctatactccggaaggacgaaggattgacagcgtgcagaccctgatgacttctccc
cctattttggtgtgtgttggccgggaagccttcagtccactgctagtaaactatgtcagg
aagagctcagaggaaaaactgcctggcttgggcaccaggtcccctggtcttggccccaga
actcctggaaatggagccaagtcccctgctactcaaggtccaagatctccaccacatgga
gctcagtcacgggccagcgagtacagtgaagggcatgagagcaagaaaagtgttaacttt
ggtctggaaaccaaaaagagcatcatccaccctcgttctgattcctcaaaccgttctgcc
cgtttctctttgtcttcagagaagtcatacggcaatggtgtcagcacactctcccagggc
agaccagctattatgaatgatgacattgaaaagcgtgtcctggtcaataaagatggcagc
ctctcagtggagatgagggtgcgttttcgcctccaaaatgaagagaccttgcagtggtcc
acccagattaaaaaatccccatctctgaccaatgactgttgccctctgagtcaggcccag
cctcattacttgcagcagggccaatcagaaagttgctctgaccctgattccactaccttc
gagccagaggttgtggagtattccagccaacctctgcagcatgttttggaagggagtggc
tgcccctgctgctatcagaggcaggaacagcagtacgacttgtgggaaaaccctgcacac
agccacaaacagcgtcctgccgcacccccgcataaatccagccacacccatactatgatg
agacacacacactcctctagctcttcctcatcatgtaactcaaggagagtggtgcgctgc
cgagcacaactctccaactgtggaggaggctctggttcagagcagagccaactggtccag
gaggagatgtgtgtgacagagcgcagagtagaagtggagcaacatggagacacccatgta
gaggtgtgcagagtgagccggtgctgcagtcgcagtgaagtgctcgctattgataccaac
ctactgccagttagcaggaaatcagttgaggatgagctaatgctggaggaaggtgaccgc
ccgctctctgggatcagcagctcctcacatgtcctgcaatcactgaaagaagaccacgat
gatgaggatgatgatctcccacccagcgcctcacagtgcggtgaaagcaatgaatcaaca
ccatccccaatctcccagacaggcaatgacaggccaacaggcaacatttcagccggttcg
gtccactctaccaaacacaagaagcacaaagacactgaagagagaggaagcagaacggta
tcagcagcctgttcctgtcactgtggatctgccaccccacagtcaacaactggagcagat
gaagtggatcgagcccccagctccaagtccagaacaagcagagcctcttgcaggtccacc
acagccaggaccccaaactcagaggaaggggtagcagatgatgaagatgatgaggtgaaa
aaggttgttagtgggttgtctggtcagacaggactttcagcaggctcacggcagtcagga
gcatccagtgtatgtcataactgtgggggctgccaacatggggtcaactccagttccagt
agcagagcttcacagagctcacatcacaccaaccaagcatctccaaaacctggctcacct
ccccatgaccaagagaatgccaatgatggcagtgaagaagatggctctgatgtgtcagct
gtgtcaacacaatccaacaaaagtaacctcaccaaccacgggcgctgctctcaaatatca
aatgttgtggagggcagggcatctcgtgccatgtccagaaagtccaatctggagccagca
gaaaaagaggaagaacggcctcccagtgccacctcagccacaagccacaggtccagcaga
tcgcataagtcttgctgtaatggtgccactgatgccacaactgaaaaagaggaggagaga
agccccagcgctatgtctgctctgtcaaacttgtctgccaagtccagcaagtctcaaaag
tccaacaaaaatggtacagtagaaactctggacatcaaaacaagagaggaagcagaggga
cagaatgttgaagaaagagcaggtagctccttatcagccaaatcttgtatttcagcaaag
tccagtgcttcagtcaggtctcacaagtccaattgtccatcacgtattagggttgcctct
ccatctgacaatgcagctgtggaagaggatgaaacaaacaatagagctcccagtagcctt
tctgttaagtctaccaaggaagaaagacctgatagtgtcctatctgctaaatcagctaaa
tcaactaaatcaaatgtgtcaggaaagtccagcaagtcccacaagtccacttgcagtcat
tttgtgagagaaatttctccaggtgctgaagatcctattgaagatgcaacaggaaaggaa
ggagaaacagaggtagaggaccgagcagcgagcaccctgtcaaccaagtcaaatgtgtct
gccaagtctaataaatcccgtaaatccaccaaagattcacaaaggtcaccttcacccggg
tcagaggctggaggagatgaggaagaaagggcagcaagtcaaatgtctgccagatcagtt
aaatctaacatatctgtcaaatctaattgtaatggcaatgaaaaggtagcagaggaggct
gaagaagaagaaaatgagaatgtggaagaggaaacacagccaagaccagaaagtgtagca
tctgccaaatcagaaaatgaagagaggccagccagtgcagtgtcctgtaaatctaaaaag
tctctctgtaatagcaacacagatgaaactccagaaatgggagacaatacaggagattgt
gacaaggctgaggttagagctgctagtgctttgtcaggtaaatcagcttcctctgcaaag
tctcaccacacaaattgttcaaagagttcaagagtagcttctccagctaaggatacatct
aaaacagaggttgaccgaagccccagtgctatgtctgggaaatcaaacacctctgccaag
tctgctaagtccaaagggtcaaaccacaccccagcatcgccaaatgcagatgaagctgtt
gttccttctacagagacaaatgaagaagagaagcaagatgaaaatcaagagcgggtggct
agtgccatgtctgtaaagtcaaaatcttcagtgaggtcaggtacttcacacaagtcaaat
tctaaccagcatgttaaatcagtgtcacctagttcaaatgttgtcaccattaaaacacca
gaaggggttgatgaggaaggaaataagacaacagagagaccaaccagtgctgcatcagct
aaatcgggaaaatctattgctgttattgaaacagcagatgcagatgaaaaccaagaggaa
gacaatgcaccaaaaattaaatcttctgaacactctaatggcaaaacactttcacccagg
aggacacgatcaccccgaacacgctcacccaaagcttcatcccccagcagtcctcaatcc
tcaggacagcagttattgcctaaccctggtgttggagagacaagaggacccagtgccttg
tcagttcactccacaacctctgctaaatctggcaggtccaaatgtcactgtggaaaggca
aagaaagaaaaggagacggaggtcaaggaagtggagaaaaaagaagaggatgagaagcta
aaaagcgaggatgacaaagagccttcagatcgagcagccagtgtcctatcttcctcctcc
aaaaaagagagagaatcaggagacccggagccaccactgagtcgaaactcatcaggttca
gtatctcttgggttgccagaggaccaagaaacaggtgattcagacagtggcaagtcaaat
gtttcatttcatactgggagtaaggaaagtactttgtctcacaatcttccagcagttgat
ataccaactattgaaacacctggaggaggtaacaacgaaggtgaagaaggtgaagagcaa
aaaacagaaagaccagccagtgaactttcagccaaaagcagcaggtctcacaagtcttca
tgtagctgtaaagtcaaagcagcagctcgattgggtaccagcccaaccaaagcaggaaat
gaccttgaaacaggaagtgtgaagtctgctaacaatctggatgcagttgacaataggacc
ccatctgcaatgtcatcagcaagtgctaaagttaggagcaaatcccctgcaaattcaaca
aataataatgctgaaaacaaggcctccagcagaccagctagtaaaaccaaagggaaagat
gtcacagacgacgcagccagtgtctgcccaaagagtccctgttgcctcaggcctgagtct
gcagcttcagctaagtcagtgtcaaaaatgaaagcctcaaagcagagtaaacaagaggat
ccagtcatatcagaagatgaagtcaaaggtgacagtggtagtgtcaagtctgttaaaccc
tcaaagccctgtccttcacacagctccaggctatccagcaaagtggagacatgtagtgaa
agtactctgtctcactctctgtccgctgctgacctgctgaaggaaaccatggccactaca
cgtccatacagtcgacagtcaaaggccagcaaaaccagcgacaagccgagcagtgagaaa
agtgggatgtgtcagagaaacaagagccagatggatcggaaagagctggaactgacacct
gcctttctacctaacacttcccctaatgaggtcgttagcgattggctgcggagcatcccc
actaatggcaacttgctcactcttgatgatgagctgaacaaggaagagcaggaggtgaag
gagaaggaggaggttgaggagaaacctggagaggaggtagcaaaggaggaggatagtcct
gacgctgagaaagtagacgaggaggaggaagctgacgctgacgagaaagaggagaaagag
gaagaagttgaatgtgatgcagcggagggggagaagagcgcagatccagctccaggtgtt
gcagtcgggacttcagttcgcaccaccaatcttttgttgagtggtgattctcagccaaag
aactggcattcttcagtagcagtgatgaaagttctcctgggctcttctctgagtcgatct
cggagcttgcctgaggtgtctccagtttatggtcgcagactgagcacatcagccaagggc
ctcttggactgtctggcccagctgcagctcattgagcctgcagtgagccctggctgtgac
ccacaaaaggaccgcaagcagcagtatgatgacattatggccatccttcagtccctctgg
ctcacagatccaaaggacattgaggtcaagaaaagcagcagcgaggtgactccaccgagg
tcctcatccggggtgggtatgagcagtggctctggtggatcagggaaagagaatgtaaat
caaggaggagatgaaatactcccaaaggagacagaatctctacatgaggatgagggagcg
gagaaagttgaagaagaaaaggaagaggaagaaaatgaagaagcaggtgaccaggaaatt
gaggctgaagcagaaccagaatcagaagagacaaaaccagacacagcagaggaatcggtg
caaattgatgaacagagtataacccctccaagcctagacagcccaaaagccactgacaac
ccctcatcatcagacaagagctctgttaatgacagctccaaatcccccaccgataacaag
cgagaacaagaggactcaagctcaggcacacccccaactgtcgtgcgagcacccttgtcc
aaaagactatcccaagatcctgatccagtgtgggtcctgcaacttctgaagaagctggag
aaacaattcatgaaccactacattaacgccatggcagagttcaaagttcgctgggacctt
gacgacagcctaatcttggacacaatgatctccgaactgagagaggaagtgagccggcgc
atccagaccagcatcgaacgtgagatgagaaagattcagagtcgagccggcaaagtgggg
aggtctcctcggccaccacaactaggaaacctctccagggagtccaccgtaacagacagg
aggcgtcagatgttgaaggtcatgaagaaccagtcagtaaatcctgccgacaccttcagt
gataacgatataacgggtgagttcagtgaccagcgaagtgaagatgagtactgtccctgt
gatgcttgtgtacgcaagaaaatggctgaacgacctttcaaaagtaacccgctggcatct
gacgccccactgatgatggaatttgacctccttaagatacttcagttgaagaaaagccca
tcccctgcaccagtttcttcactactggtggagggggaaagtgaaagcatggtagatgag
gaggggaggaatttagaggtagtgcaggaagaagaagaggaggatgaaacgaaagaggat
atcaaagctgaagttgttttagaggagactatcccagaggaggatgaggaagagatggga
gatgagcaggaggaaaatgacggcggagatgaggagcaggaagagggtgaaacaggtggc
gaggaagctgcggaagaaggggcatcagaaaatggagaggaggaagaggaggaggaagaa
tgcccgtgctgttgtgctagaaatgaggaggagagtgataaagcagaagagggagacgag
gaggcaaaagaggcaacagcagatgaaggagagaccactgaaaatggggaaggtgaggag
gaggaaggggagacagacttggcaaacgaagaatcaacaccagtggaagagcttgtggag
gggaacatcagttcttcagcagaggatgagagcaaaggtgatgacggcaccggagaggac
aagtcaaatgaagatgaagagggaggagagagcgaggagacgtcacaacagggggagact
ccaactgtctgtgtgactgagggagaggaagccgacccagaagactcaaacactggagag
tgttttgtcacaggagatgaggaggagaaagagggtggaggcaatggagatgaagaggag
gttgtggaagatgctgtcgaggaatttaagcacaaggaagaggagggagaagagatcgaa
ggtaattgggaggatggcgctctgcaccatcaggtcaccaggacctcaatggagtcccaa
cctggctccatggaagatattggcagggattcacctcagaatcctgttatcgccacagaa
gtgcccaaaaaggctgcagatggatccactggtggtgtgtgccagacgacgagccggtcg
ccagccagggtcaaacgacgcaaacccaaagagagcgacgttgcatag
DBGET
integrated database retrieval system
