Scomber japonicus (chub mackerel): 128354205
Help
Entry
128354205 CDS
T09718
Symbol
trim25l
Name
(RefSeq) tripartite motif-containing protein 16
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128354205 (trim25l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128354205 (trim25l)
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128354205 (trim25l)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128354205 (trim25l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRIM_CC
PRY
zf-C3HC4_4
SPRY
zf-C3HC4
zf-B_box
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
ANCHR-like_BBOX
RING_XB3-XBAT31
zf-RING_5
ATG23
Trypan_PARP
Spore_III_AB
FUSC
Tweety
DUF948
5_nucleotid
Motif
Other DBs
NCBI-GeneID:
128354205
NCBI-ProteinID:
XP_053170446
LinkDB
All DBs
Position
24:complement(13492311..13499797)
Genome browser
AA seq
775 aa
AA seq
DB search
MSGKLWTEEQFNCPVCLDLPNDPVTIPCGHSYCMACIKDYWSKDDPKGIYSCPQCRQTFC
PKPTLSRNTMLAEAVEQLRKGARMSDVRESMRSARGVSSSSSGSKWKLSSAAVPCDMCKG
KQKAAVKSCLVCMSSYCESHLKPHQTQKAMKKHELIAPTSNLSEKICTQHKYLQEFFCRQ
CKMYICWLCTSNQHKGHESVSTKAERLDKQKLLSEIQTENQQRLKRREQELKDMKKMMEM
MKRSASRVHDDTEKVLAELQRSVERLQELLEEVMDEVGLEKMGQAQEVVDSLEAEIKELK
RRDTEMKDLVRCEDHIHYLQTYESMCSPLESGDLPPVNVNPEASFEPVRDTILDLREQVE
ELCNQELGKITKQVNDTTLFTLGDTAPTASVGTRSTDRRGLGLGYKSYDVRSRDTPRVRE
ANSRPSPRPSPSPTLSRRESQSLWSRSSQSQAAHATPPNPTPAPVPVPTPAPAPAPTPAP
APASTGGFSRMASISSLFRSHRRGTTPATPISQATPANNTPSAGVNLWGMAALSETPTEV
NPSLFLDSPTPNSMNHAPAFPALREINIDSIQAPEPRTREEFLQYSVTLTLDPNTAHRRL
TLSDNNTKATLQGAAQPYPDSSQRFDGWTQVMCQSPLYAQRCYWEVEWRGRGSSMGVAYG
ALNRKGSDARAGLGYNAQSWTLELSDTCCSAMHDNEKKDIPVTYSPRLGIYLDLSTGTLA
FYSVAESLTHLHTFRANFTQPLYAAFGVGSGVGVGLDFALGQFSSSSDSIKICPM
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaagctatggacagaggagcagtttaactgcccggtgtgcctggatctccca
aatgatccagtcaccatcccctgtgggcacagctactgcatggcctgcatcaaggattac
tggagcaaggatgaccccaaggggatctacagctgcccccaatgccgtcagaccttctgc
cccaagcccaccctgtccaggaacaccatgctggctgaagctgtggagcagctacgcaaa
ggtgcccgcatgtctgatgtaagagaatctatgcgaagtgcccgtggggtttcctcttct
tcatctggatctaaatggaagttgtcctcagcagctgtgccatgcgacatgtgcaaagga
aaacagaaggcagcagtcaagagctgtctggtgtgtatgagctcatactgcgaatctcac
ctgaagccccaccagacccaaaaggccatgaaaaaacacgagctgattgcccccacaagc
aatctgtctgagaagatctgtacccagcacaagtacctgcaggagttcttctgccgccag
tgtaagatgtatatctgctggctgtgcacaagcaaccaacacaaaggccatgagagtgtg
tccaccaaggcagagcgcttggataaacagaaactgctgtcagagattcagacagagaac
cagcagagactgaaaaggagagagcaggagctgaaagacatgaagaagatgatggagatg
atgaagcgctctgcaagcagggtacatgatgatacggagaaggtgctggctgagctgcag
cgctcggtggagcgtctgcaggaactgctggaggaggtgatggatgaggttggcctggag
aagatgggccaggcccaagaagtggtcgacagcctggaggctgagatcaaggagctgaag
aggagggacactgagatgaaggacctggtccgctgtgaagaccacatccactatctgcag
acatacgagtccatgtgcagtcccctggagtcaggggacctgccccctgtgaatgtcaat
ccagaagcttcctttgagcctgttcgggacaccatcctggacctcagggagcaagtggag
gaactgtgcaaccaggaactgggcaagatcaccaaacaagtcaatgacacaactctgttt
actctgggtgacacagcacccactgcctccgttggaacacggagcactgacagacgagga
ctgggtttaggctataaaagttatgatgtgaggagcagagacacaccacgagtgagagag
gccaactccagaccaagccccagaccaagccccagccccactctcagccgcagagagtcc
cagtctctctggagcaggtccagtcagagccaggctgcccatgccacacccccgaatcct
acccctgccccagtgccagttcctactcctgcaccagcaccagctcctactcctgcccca
gcaccagcatcaactggaggtttcagtcggatggcatcgatcagcagtctcttccgctcc
catcgccgtggcaccaccccagctacccccatcagccaagctaccccagccaacaacaca
ccatctgcaggagtaaacctatgggggatggctgctctgtctgaaacaccaacagaagtt
aaccctagcctgttcttggattcacccacccctaactccatgaatcatgctcctgctttc
cctgcattgagagaaattaacattgacagcattcaggccccagagccaaggaccagagag
gagttcctacaatactctgtgaccttgacccttgaccctaacacagcccacagacgcctg
actctttcagacaacaacactaaggccaccctgcagggggcggcgcagccctaccctgac
tcttcacagcgttttgacggctggacccaggtgatgtgccagagcccgctgtacgcccaa
cgctgttactgggaagtggagtggcgaggcagaggatcctctatgggtgtagcctacggt
gcattgaacaggaagggctcagacgcaagggcagggctgggctacaatgcccagtcctgg
accctggagctgtcagacacctgctgctcagccatgcatgacaatgagaagaaggacata
ccggtcacctactccccccgtctgggcatctacctggacctgtccacggggacgctggca
ttctacagcgtggcagaaagcctgacacaccttcacaccttccgtgctaacttcacccag
ccgctttacgctgccttcggggtgggaagtggagttggggtgggtctggactttgccctt
ggccagttcagctccagctctgacagcatcaagatctgtcccatgtga
DBGET
integrated database retrieval system
