Scomber japonicus (chub mackerel): 128354236
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Entry
128354236 CDS
T09718
Name
(RefSeq) cyclic nucleotide-gated channel cone photoreceptor subunit alpha-like
KO
K04950
cyclic nucleotide gated channel alpha 3
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sjo04040
]
128354236
Ion channels [BR:
sjo04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
128354236
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Motif
Pfam:
Ion_trans
CLZ
cNMP_binding
CDC45
ENTR1
RR_TM4-6
Presenilin
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
128354236
NCBI-ProteinID:
XP_053170472
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All DBs
Position
24:complement(18472519..18479027)
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AA seq
641 aa
AA seq
DB search
MDAQDHTSLARTGLLSRLSHMKHSGRSSVGPAVSGLSSQSTKDSDGRWSLAAQNMNNCNN
NDGKKDEKKEEPKKDEKKEEPKKDDKKDDKKDEKKEEPKKDDKKDDKKDDKKDDKKKEEP
KEVWIMDPATEMYYFWLCTISVPVFYNLMFLVARACFNELQYTNTTLWLALDHISDVIYY
IDTFVRARTGFLEQGLLVRDEKVLREKYMKTQQFRMDIFSIIPTDIVFLKIGIDNPEWRF
NRLFRLGRLFEFFDRTETRTNFPNIFRIANLVLYIIIIIHWNACLYFAISKVLGFGSDTW
VYPGMKNPEFARLARQYIYCFYWSTLTLTTIGETPPPVRDIEYFFVVADFLTGVLIFATI
VGNVGAMISNMNAARVEFQAKIDSIKQYMEFRKVTKDLEIRVVKWFDYLWTEEKTCDEKL
VLKNLPDKLKAEIAINVHLETLRKVRIFQDCEAGLLVELVLKLQPQVFSPGDYICKKGDI
GREMYIIKEGKLAVVADDGVTQFVVLSDGAYFGEISILGIKGSKAGNRRTANIRSVGYSD
LFALSKDDLMEALTEYPEAKYALEDKGRAILMKDNLIDEALMNVTDAKDLENKVNQIEAS
FDVMSLKFRKLTAQYESSQRKLKQRLCNMSNQVRTLRTDNE
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggacgcccaagatcacacatccttagcaaggacaggactgttatccaggctgtcccat
atgaagcactctgggaggagcagtgttggccctgcagtgtctggccttagcagccagagt
acaaaggacagtgatggccgatggtcgctggctgcacaaaacatgaacaactgcaacaac
aacgatggtaaaaaagatgagaagaaagaggaacccaagaaagatgagaagaaagaggaa
cccaagaaggatgacaagaaagatgacaaaaaagatgagaagaaagaggaacccaagaag
gatgacaagaaagatgacaagaaagacgacaagaaggatgacaaaaagaaagaagagcca
aaggaggtgtggatcatggacccggccacagaaatgtactacttctggctgtgcacaata
tctgttccagtgttctacaatcttatgttcctggtggccagggcttgttttaatgaattg
cagtacacaaatacaacactgtggttggctttggaccacatctcagatgtcatctactac
attgacacctttgtgagagctaggacaggttttctggagcaagggctgctggtaagggat
gagaaggtcctgagagaaaaatacatgaaaacacaacagttcagaatggacattttcagt
atcattccaactgatattgtattcctcaaaattggaattgacaacccagaatggaggttc
aatcgtctctttaggttaggacgactctttgagttctttgaccggactgaaactcgaacc
aatttccctaacatcttccgaattgctaatcttgtactttacatcatcatcattatccac
tggaatgcttgcctctactttgccatctccaaggtgcttggctttggctcagacacatgg
gtatatccaggcatgaagaatcctgagtttgctcgcctggccagacaatatatttattgc
ttttattggtccacacttaccctaacaactattggtgagacaccgcccccagttcgagac
attgaatacttttttgttgtagctgacttcctcactggggttctgatctttgctacaatt
gttggcaatgttggtgccatgatttccaacatgaatgctgcacgtgtagagttccaggca
aagattgattccatcaagcaatacatggagtttcggaaggtcactaaagacctagagata
agggtggtgaagtggtttgactacctctggacagaggagaaaacatgtgatgaaaagctg
gtgctgaagaaccttccagataaactaaaggctgagattgccatcaatgtacatctggag
accctaagaaaagtgcgcatttttcaagattgtgaagcaggtttgcttgttgagttggtc
ctcaaacttcagccacaagttttcagtcctggtgactacatctgtaagaagggtgacatt
ggcagggaaatgtacatcatcaaagaaggaaagctggctgtagtagcagatgatggggtg
acccagtttgtggtcctcagtgatggggcatactttggagaaatcagtattctcggtatc
aagggcagtaaggcaggtaaccggagaacagctaatatccgaagtgtgggctactctgat
ctgtttgccttgtccaaggacgatctcatggaggcactcactgagtatcctgaagctaaa
tatgccctggaggataaggggagggccatcctgatgaaagataacctcatagatgaagca
ctaatgaatgttactgacgccaaagacttggagaacaaagtcaatcagattgaagccagc
tttgatgttatgtcacttaaatttcgaaagctcacagcacagtatgaatcctcccagcgg
aaactcaagcaacgtctctgtaatatgtcgaaccaggtccgaactctcagaacggataat
gaatag
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