Scomber japonicus (chub mackerel): 128354256
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Entry
128354256 CDS
T09718
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04140
Autophagy - animal
sjo04148
Efferocytosis
sjo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128354256 (vps16)
04148 Efferocytosis
128354256 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128354256 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128354256 (vps16)
Membrane trafficking [BR:
sjo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
128354256 (vps16)
Hops complex
128354256 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
128354256
NCBI-ProteinID:
XP_053170490
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Position
24:complement(63229..82286)
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AA seq
834 aa
AA seq
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MAFITASWNPLGDAFYRKTELYEMCWSLRDGLRDCLVAAAPYGGPIALLREPLRRSPSSR
PQLDIYSASGGSIASFPWKSGAVVQLGWTVSDELLCIQEDGSVLIYDLFGSFKRHFSMGQ
EVVQTQVLEAKVFHSPYGTGVAIVTGSSRFTLATNIDDLKLRRLPEVPGLQGPPSCWAVL
TQDRQTKVLLATGPDLYILDSTSCTAVSPPGLGPQAGSIVHMCVSFSYKYLALFTDSGHL
WTGPSHLQDKLSEVDTKVRMSPKQMVWCRRPKSQQPSVVLMWDRLLLVAGVCSDTIQFPL
DDQCVCVGELDGVRIISSSNQELLQEVPLVCQDIFKIASMAPGALLLEAHREYEKCSQKA
DEYLREIKEQSMLGEAVRQCVEAAGHEYDSNTQKSLLRAASFGKCFLTDFSAESFVSTCR
ELRVLNAVRDAAVALPLTHTQFKQMTLQVLIDRLVYRQFYPLAIEICRYLKIPDYQGVSR
VLKHWASCKVQQKDLSDEAISRAVCVKVGDSAGVSYSDIAAKAFECGRTELAIKLLDYEA
RSGEQVPLLLKMKRSQLALSKAVESGDTDLVYTVVSYLKNEMNRGDFFMTLRNQPVALSL
YRQFCKLQEQETLKDLYNQDDDHQELANYYVTASYREKRLESRLSLLQTAVDEFNKAKNE
FAAKATEEEMKLLRFQRKLDDEKGAGLLGLSLQATMEALLALGLQKQAEQLYRDFRVPDK
RYWWLKLKSLAEKEEWEELEKFSKSKKSPIGYLAFVEVCMKSNNKYEAKKYVTKVTPEQR
VKAHLAISDLEGAAEAAMERRSESEMGAVLSRCSDSDRLLIDRLNRAKASAAKK
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcatcaccgccagctggaacccgctgggagacgctttctaccgtaagacagag
ctgtatgagatgtgttggagtctgagggacggactcagagactgtttggtggctgcagct
ccatatggaggaccaatagctctcctgagagaacctctgagacgttctccgagttctcgt
cctcagttggacatctattctgcgtctggaggttctatcgccagcttcccgtggaagagt
ggtgccgtggtgcagctgggttggacagtcagcgacgagcttctgtgtatccaggaagac
ggttcagtcctcatctacgacctgtttggatcctttaagagacacttcagcatgggacag
gaggtggtccagactcaggtgttggaggccaaagtgttccactctccatatgggacaggg
gttgccatagtaacaggctcctcccgcttcaccttggcaaccaacatcgacgacctgaag
ctcaggaggttacctgaagtcccaggtctgcagggacctccgtcctgctgggccgtcctc
acccaggacagacagaccaaagtcctgctggctactggaccagacctctacatcctggac
agcacatcctgcaccgcggtgagtcccccaggtctcggtcctcaggccggcagtattgtc
cacatgtgcgtgtctttcagttataaatacctggctctcttcactgactctggacacctg
tggacaggcccctcccacctgcaggacaaactgagtgaggtcgacaccaaggtgaggatg
tctcccaaacagatggtgtggtgccgcagaccaaagtcccagcagccgtctgtggtgttg
atgtgggacagactcctcctggtggccggagtctgtagtgacaccatccagttcccattg
gatgatcagtgtgtgtgtgtgggcgagctggacggcgtgcggatcatcagctcgtccaat
caggagctgctgcaggaggttcctctggtctgtcaggacatctttaaaatcgcctccatg
gcgcccggagccctgctgctggaggcccaccgcgagtatgagaagtgtagtcaaaaggct
gatgagtacctgcgggagatcaaggagcaaagcatgctgggagaagcagtgagacagtgt
gtggaggcagcaggacacgagtacgactccaatacccagaagtccctgctgagggcggcg
tcctttgggaaatgtttcctcacagatttcagtgccgagtcgttcgtgtcgacgtgccga
gagctgcgagtgctgaacgccgtcagagacgctgcggtcgctctgccgctcacacacact
caattcaaacagatgactctgcaggtgctgatcgacaggttggtgtatcggcagttttat
ccgctagcgatagaaatctgtcgttatctgaagattccagattatcaaggagtcagccga
gtcctcaaacactgggcttcctgcaaggtgcagcagaaggacctatcagatgaggctata
tccagagcggtgtgtgtgaaggtaggagactcagctggagtgtcgtactctgacatcgct
gctaaagccttcgagtgtggacgcaccgagctcgccatcaagctgctggactacgaggct
cgctcaggtgagcaggtccctctgctgctgaagatgaagaggagtcagctggctctgagt
aaagctgtggagagtggagacactgacctggtgtacacggtggtgagctacctgaagaac
gagatgaacagaggtgatttctttatgactctgaggaaccagccggtcgctctcagcctc
tacagacagttctgtaagctgcaggaacaggaaacgctgaaggatctttataaccaggat
gacgaccaccaggagctcgctaattactacgttactgccagttacagagaaaagcggttg
gagagtcggctgtcccttctgcagacggctgtggacgaattcaataaggccaagaacgag
ttcgctgccaaggccaccgaagaagagatgaaactgctgcgattccagagaaaactggat
gatgagaaaggggcggggctactgggactgtctctacaggcaaccatggaggctctgctg
gcattaggacttcaaaaacaggcggagcagctttacagagacttcagagtccctgataag
aggtactggtggctcaaactgaagtctttggcagagaaggaggagtgggaggagttagaa
aagttctctaagagtaagaagtctcctattggctacctggccttcgtggaagtctgcatg
aagagtaacaacaagtatgaagccaagaagtacgttaccaaggtgacgcctgagcagagg
gtcaaagctcacctggccatcagtgacctggagggggcagcagaggcagcgatggagcgg
aggagtgaatcagagatgggggcggtcctctccagatgctccgactctgaccggctgttg
atcgacaggctgaaccgagccaaagcctccgctgccaaaaagtga
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