Scomber japonicus (chub mackerel): 128354348
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Entry
128354348 CDS
T09718
Symbol
zc3h13
Name
(RefSeq) zinc finger CCCH domain-containing protein 13
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128354348 (zc3h13)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
128354348 (zc3h13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH
zf-CCCH_DUS3L
zf-CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
128354348
NCBI-ProteinID:
XP_053170561
LinkDB
All DBs
Position
24:complement(9586108..9596773)
Genome browser
AA seq
1870 aa
AA seq
DB search
MSKIRRKVTVENSKTISDSSSSSTTTTSSTGNPAAPSRRPSVFERLGPSTGSNAADSHCR
NWLKTGNCSYGNTCRYTHGTQPRGKGFSFSRSAERPTGDLRERMKNKRQDVDPENLKRDP
DEPISPTARQRDSSRGRHREKEDIKITKERTPASEEEPTEWETNREDSDIGDYDYELSLE
MKRQKIQRELMKLEQENLEKREEIVIKKDETSAKTRATAMPKASPEQLSSKDSPSSRKSS
GSPKHKSATKGPGSGKKEKKMSVSSPVSEPARSSKGGHSKKKGPRTPSPPPPVPLDLPVM
GKKHKGKHKNKEKSEEKLKEGKDRGRDTEKHKEKKEKRRDQSDSSHKAKRSVTSEERSGS
VSSPSRGASPSARKKSASPKATSHKAALTSPSRRSPSPPRHQRTPTPPHHRSPSSHSGSS
AQRNSPSPPRRRRSSSPTYHRSAAAAASASSPPSSRRSRSPPASHDTSSPHRRSDRSSPG
RRHSRGRERSRGERERSPPAQERRHERRDESRSKREKDSVRDDRDYDSEQVSSRDSRDDR
DNRDARDRRDGRDRGRETTRESRDHRDSRDAKDSRDSRTETRSSRESLERRDRERERERE
REKEREKDREREKERERDRTETHRKEEPNQDDRSYGRGYGREDGGRAEGRTDNRTDRPER
NGRGRGRANEIPDKGSNRNSRGSQLESSHDNWESRSSAVRERSTERSTDRGATERSSERG
SDRDRYEGDRRGEPARDSSYDRRGGHGERDRRDNRERDQRAASPNRHQGRSEEPEREERR
DERRGDRAEERRDDRTRDRERERERERDREREREKERDREREREKEKEREKEREAERERA
RERERERERDRERERDRERDREREREREEREREREERERERERKEREREREREREQRERE
RQREWEERERGREERRERREDTRDDRPVRETRDDRKTSRKRHRVESSPSPTRPSPKRRPG
DVSPADSDGYNSTEEKSERPIGRGPAKLHPQPLLPSPVCPPPSDSADKHRLLSQVVRPQE
PLLRSPPRATPSDEKPSHWKDEERRGAVDKREARNRHEDLEPRGERARGGDRRAEHVPDI
PPDTRTRGRDQRESTPPPAPTTAAIASEDRDTAGSQSHEEGKKKTKSQRKGLKKGRKDEE
IVAANTLASAGDRFNPEPPISGAAKGPPPLHSPRKGAKKKALERKRKRGGGESDVSEEES
SAHQPHSKKKRGPRTPPPSMRPDHRGPGGNAEPSPLSKMDNFSDWSDEDVTDRGVPLEPA
APLAPAERAPAEPLRRGSGPRVGRERCNPPPIAPLLPQDPPMLLQTLTPQPLMSQPLLRK
PPPEQARSSSMGSNQSRTSSRRLRSPSNESAHRDDAQGQRSRRGRLQGTNSRDRERERER
ERERPVVSEPPGAERKSRIDQLRRGEPSRSTSSDRQDSRSHSSRRSSPDSERQARSQSRA
GSYDSRERERDREQFERERDRKDLRPQQQQQQQQQQPLLLQQPLQQQRDWEPEPRDWPSR
GREPLLMRPGREPLLRERDIRDRERLLPEGLIQQHERERERERERESRGERGGDRERERM
MMMDLPPHGDSRAPGRGDLRGDMRGDLRGDMMRQDRSDYEPLLPREAFSPAEPEKPSNSH
HLIGELEKADSIDGEDDVKEDDGQSVASVGEEYEPISDDELDEILADSQKKEDQQDDEKT
TGPLDVIDVDWSSLMPKKKQEPRAAGAALLRFTPGAVLLRAGISKRLAGPALLEQVKEVC
KSELDDPKDADKLFEHDLGALNMAALNRRVERAGLLTNLGPCCKALCARRDFAIRRQLLK
NDKGLTKQYPTTPVVDNELLQMSMRLFRRTMSGQAPAPERCDGGSAPAATDVAAAGSSKL
STAQPEVCVS
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagatcaggcggaaggtaacagtggagaattcaaaaaccatatctgacagcagc
agcagcagtaccaccacgaccagcagcaccggcaatcctgccgccccctctcgccgacca
agcgtgttcgaaagactcggccccagcactgggagtaatgctgctgacagtcactgtaga
aattggttgaagaccggtaattgcagttacggcaacacttgtcgctacacacatggaact
cagccacgaggcaaaggatttagctttagccggtcagcagagaggcccacaggtgatctg
cgggagaggatgaagaataaaagacaggatgttgacccagaaaacctgaagcgagatcca
gacgagcccatatcccccacagcaagacagagagattcctccagaggcagacacagagag
aaggaggatataaagatcacgaaggagcgcacaccagccagtgaagaagagcccacagag
tgggaaacaaatcgtgaagactcagatatcggtgactacgactacgagttatccctagag
atgaagcgccagaagattcaacgtgagctgatgaaactggagcaggaaaacctggaaaag
agagaggagatcgtcatcaagaaggacgagacctccgccaaaacacgagccaccgccatg
cccaaggcctcccccgagcagttaagctctaaagattccccctcatccaggaagtccagt
ggctccccaaaacacaaaagtgcaaccaaagggccaggctctgggaagaaagagaagaag
atgtcagtatcctcacctgtgtcagaacctgccaggtcctcaaaaggaggccacagcaag
aagaaaggaccccgtaccccgagtcctcctcccccagtccccctggatctccctgtgatg
gggaagaaacacaagggcaaacacaaaaacaaggagaagtctgaggagaagctgaaagaa
gggaaagatcggggacgagatacagagaaacacaaagagaagaaggaaaaacgcagggac
caatcagacagctcccacaaggccaagcgttcagtgacatcagaagagcgttctggtagt
gtgtcatctccctccaggggtgcttcaccctcagccaggaagaaatccgcctctcccaaa
gctacgtcccataaagctgcactgacctccccttctcgcaggtcaccttctcctccacgc
caccagcgcacccccactcctccccaccaccgctccccttcctcccactctggctcctcc
gcccagcgtaattctccctcccctcctcgccgccgccgctcatcctcacccacctaccac
cgaagtgcagcagcagcggcctccgcctcctcacctccaagctcccgccgctcccggtca
ccccccgcctcccatgacacctcctcgccccaccgtcgttctgacaggtcgagccccggc
aggcgccactcgaggggccgcgagaggagccgtggtgagagggagaggagtccgcccgca
caggagcgcagacatgagcgcagagatgaaagccgcagcaagcgagagaaagacagcgtc
cgtgacgaccgggactatgactctgagcaggtgtcatcgcgggacagtcgcgacgacagg
gacaacagagatgcccgagatcgacgggatggtcgcgatagaggaagggaaacgactcga
gagtctcgcgaccaccgagacagcagggacgcgaaggactccagagacagcaggacagag
acccgctcgagccgagagtccctggagcggcgtgaccgtgagcgggaacgagagagggaa
cgggagaaggagagagagaaggacagagagcgagaaaaggagagggaaagggacaggact
gagactcacaggaaggaggaacccaaccaggacgacaggagttacgggagaggttacgga
cgtgaagatggagggagagcggaaggaaggacggacaacaggacagacaggcctgagagg
aacggacgagggagaggccgtgccaacgaaatacccgataaaggttccaacaggaactcc
agaggttcccagctggaaagcagccacgacaactgggagtcacgaagcagtgcggtgcgt
gaacggagcacggagaggagcacggaccgcggcgctaccgaaagaagctctgagaggggt
tcagaccgagaccgctacgagggcgaccgaagaggagagccggccagggactcctcctat
gacaggagaggagggcacggtgaacgggatcgcagagacaaccgagagagagatcaaaga
gcagcttctccaaatagacaccaggggagatcagaggaacccgagagggaggagaggagg
gacgagcgccggggagacagggcggaggagagacgggatgacaggacccgcgaccgggag
cgcgagagagaaagggagcgggacagggagcgagaaagggagaaagagcgagacagggag
cgcgaaagggagaaggaaaaggagcgagagaaggagagggaggccgagagggagcgcgcc
agggagagagagcgggagcgggaacgagacagggagagagagagggacagggagagagac
cgggagagggaaagggagcgcgaggagcgggagagagagagggaagaacgggagagggag
agggagaggaaggagcgcgaacgggagagggagagagagagggagcagcgggagcgggag
aggcagcgggagtgggaggaacgcgagagggggagggaggagaggcgggagaggagagag
gacaccagagacgaccgccctgtcagagaaacccgggacgatcgcaagacgagccgtaag
aggcacagagtggagagcagcccgagccccacccgaccctcacctaagagaagacccggc
gacgtcagtccggccgacagcgacggctacaacagcaccgaagagaaaagtgagcgcccg
attggccgagggccggccaagctccacccacagcccctgctccccagcccagtgtgtccg
cctccatctgacagtgcggataagcatcgtctgctaagtcaggtggtgcggccccaggag
cccttgttgcgttcgccaccgagggccactccatctgatgagaagcccagccactggaag
gatgaggagcgcagaggagctgtggacaaaagggaagcccgcaaccgccacgaggacctg
gagcctcgaggggagcgagccagaggaggcgacagacgagcggagcacgttccagatatc
ccgcccgacacccgtacacgaggcagagaccagcgagaatccacaccacctcctgctcct
acaacagcggccattgccagcgaagacagagacaccgctggctcccagtctcacgaggag
ggcaaaaagaagacaaagtcacagaggaagggtttgaagaaagggcgcaaagacgaggag
attgttgctgccaacactctggctagtgcaggggaccgtttcaaccccgagccaccaatc
agtggtgcagcaaaagggcctccacccttacactcccccaggaaaggagccaagaagaag
gcccttgagcgaaagaggaaacgaggaggaggagaatctgatgtgtctgaggaagaatct
tcagcccatcagccacacagtaagaagaagagaggtccccggacgccacccccctcaatg
aggccggatcaccgcggtcctggaggcaacgcagagccgtctccactctccaaaatggac
aacttcagcgactggtcagatgaggacgtcacagaccgaggagtaccactggaaccagca
gctcctctggctcctgctgagagggctccagctgagcctctgaggaggggtagtggcccc
agggtgggcagggagaggtgcaaccccccacccattgccccattgctcccccaggatcct
ccaatgctgcttcagactctgactccacagcccctcatgtcccagccactgctccgcaaa
cctcccccagagcaggcacgcagcagcagcatgggtagcaaccagagccgcacatcatcc
aggcgcctgcgctcgccctccaacgagtcagcccaccgggatgatgcccagggtcaacga
tctcgccggggccgacttcagggcaccaactcgcgtgaccgggaaagggagagagagcgg
gagagagaaaggccggtggtgtctgaacctccaggggctgagaggaagtctcgaattgac
cagttgaggagaggagagcccagccgcagcacctcatcagaccggcaggattcccgcagc
cacagctcgagacgcagctctcctgactctgagaggcaggccaggtcccagtcccgcgct
ggctcctacgacagtcgagagcgggagagagacagggagcagttcgagcgggaacgggac
cgaaaggacctgcggcctcagcagcagcaacagcagcagcagcagcagcccctgctcctc
caacagccgcttcaacaacagagagactgggaacctgaacctagagactggcctagcagg
ggacgggagcctctgctcatgcgtcctggccgtgaacctctcctaagagagcgggatatc
agggacagggaacgcttacttcccgaaggactcatccagcagcacgaacgagagcgagag
agggagcgggagagagagagcaggggtgaaagaggcggcgatcgagagagggagaggatg
atgatgatggacctaccaccccatggggactccagggctccaggacgtggggaccttagg
ggtgacatgagaggagacctgcgaggagacatgatgaggcaagacaggagtgactacgag
cccctgctgccaagagaggcattcagccctgcagagcctgagaaaccaagcaacagtcac
cacctcattggagagctggagaaggctgacagcatcgacggagaggatgatgtgaaagaa
gacgatggacagtcagtggcatcagttggggaggagtatgagccaatcagtgatgatgag
ctggatgagatcctggctgacagccaaaagaaagaggatcaacaggacgacgagaaaact
acaggtcctctggatgtgattgatgttgattggtccagcctgatgcccaaaaagaagcag
gagccccgggcggcaggggcagcattgctccggttcacccctggggccgtgctcctcagg
gcaggcatctctaagcgacttgctggacctgcgctcctggagcaagtcaaagaggtgtgc
aaatctgagctggacgaccccaaagatgctgacaagctgttcgagcatgacctcggagcc
ttgaatatggcggccctgaacagacgggtggagagggcaggtttactgaccaacttggga
ccatgctgcaaggctctgtgcgctcgcagggactttgcaatccgccggcagctgttaaaa
aatgacaagggcctgactaagcagtaccccactacacctgtggtagacaatgagctgctg
cagatgagcatgcgtctctttagaaggaccatgtctggccaggctccggccccagaaaga
tgcgatggtgggtcagcaccagcagcgaccgacgttgctgcagctggcagtagtaaactc
agtacagcacagcctgaggtgtgtgtgtcctga
DBGET
integrated database retrieval system
