Scomber japonicus (chub mackerel): 128354562
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Entry
128354562 CDS
T09718
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
128354562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128354562
03041 Spliceosome [BR:
sjo03041
]
128354562
03036 Chromosome and associated proteins [BR:
sjo03036
]
128354562
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128354562
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128354562
mRNA cycle factors
Common to processing body (P body) and stress granule
128354562
Spliceosome [BR:
sjo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128354562
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
128354562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
128354562
NCBI-ProteinID:
XP_053170756
LinkDB
All DBs
Position
24:8840394..8859827
Genome browser
AA seq
741 aa
AA seq
DB search
MSHVAVENVHGLEQQLAVLDLTAADGQGGGTNRRYIPPHLRNKDASKNAGNAFAAGRQGG
YTIAPAANYGWDGGRNNFVNGYHDNRMGGGNTFNRGPPRMERGRGGVGGGGYRGNRGGAF
NPINPAQPMGFGGYENKDAGGWNTAKDAYSSFGNNRGKSAFFNDRGNANRGRFDHGGFGG
GGGGGNSRWVEESRDEGDWSKPTPRNERLEHELFSGSNTGINFEKYDDIPVEATGQNCPH
HIESFQDVDMGEIVMGNIGLSRYTRPTPVQKYAIPIVKSKRDLMACAQTGSGKTAAFLLP
ILSQIYTEGPGEALTAAKATGQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRS
RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRML
DMGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSE
NITQKVVWVEESDKRSFLLDLLSATVIPSEVQDNTGDNIEKPGKDSLTLVFVETKKGADA
LEDFLYREGYACTSIHGDRSQRDREEALSQFRSGKCPILVATAVAARGLDISNVKHVINF
DLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAY
EHQHKSSNRGRSKRFSGGFGARDYRQTAAGGNAGGFVGRGARNQAGHGGNRGFGGGGFGN
FYTSDGYGGNYSHSQVDWWGN
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgtccacggtctagagcagcagctcgctgtcctagac
ttgaccgcagcagacgggcaagggggaggcaccaaccggcgatacattcctccacattta
cggaacaaagacgcttccaaaaatgcaggaaatgcctttgctgctggtcgacagggtggc
tacaccatagcacctgcagccaactacggctgggatggggggcgcaacaacttcgtcaac
ggctaccatgacaaccgcatggggggcggcaacacattcaaccgtgggccgcctcgcatg
gaacggggccgaggtggcgtcggaggagggggttaccgcggcaacaggggtggagccttc
aaccccatcaatccagcgcagccaatgggcttcggtggctacgaaaataaagatgcaggc
ggatggaacacagccaaggatgcctatagcagttttggcaacaaccgaggaaagtctgca
ttcttcaatgacagaggcaatgctaacagagggaggttcgaccatggtggatttggtggt
ggaggaggaggcggaaacagccgctgggtggaggaatccagagatgaaggagactggtcg
aagccaacgccacgtaacgaacgccttgaacatgagttgttctccggcagtaacactggg
attaactttgagaagtacgacgacattcctgtagaggccacgggacagaactgccctcac
cacatcgagagtttccaggatgtggacatgggtgagattgttatgggaaacatcggcctg
agtcgctacaccagaccaaccccagtccagaaatatgccattcctattgtcaagtccaag
cgagacctcatggcctgtgcacagacagggtctggaaagacagcagcgttcttgctgccg
attctcagccagatctacactgagggaccaggtgaagctcttactgcagctaaagccact
ggtcaggagaatggaaagtacgggcgtcgtaagcaataccccatctctctggtactggct
ccgacccgagaactggcactgcagatatatgatgaagccaggaagttttcctaccgctca
agagtgcgtccatgtgttgtgtacggaggagccgacattggccagcagattagagacctg
gagagaggctgccacctgctggtcgccacacctggaagactggtggacatgatggagagg
ggcaagattggactggactactgcaactaccttgtcctggatgaggcggatcgtatgttg
gacatgggctttgaaccacagattagacgtatcgttgaacaggacaccatgccccctaaa
ggcatccgacagaccatgatgttcagcgccacctttcctaaagagatccagatcctggcc
cgggatttcctggaagagtacatcttcctggcggtgggcagagttggttctacctcagag
aacatcactcagaaagttgtgtgggtggaggagagtgataagaggtcttttctcctggac
ctgctcagtgctacagtcatccccagcgaggtacaggacaatactggagacaacatagag
aaacctggtaaagactcgttgactctggtgtttgtggagaccaagaaaggcgcagacgcc
ttggaggacttcctctatcgggagggttacgcctgcaccagtatccatggcgaccgttca
cagagagaccgagaggaggccctaagccagttcagatcaggaaaatgccccattttggtg
gccacagcggtagcagctcggggtctggacatctccaatgtgaaacatgtcattaacttt
gacttgccaagtgacatagaagagtacgtccaccgtattggacgtacaggacgagtagga
aacctgggattggccacatcgttcttcaatgacaagaatgggaacatcactaaggacttg
ctggacatcctggtagaagccaaacaggaggttccctcatggcttgagagcctggcctac
gaacaccagcacaagagcagcaacagaggacgctctaagaggttctctggtggttttgga
gcacgtgattaccgccaaacagctgctggaggaaacgctggaggctttgtaggacgtgga
gctcgtaaccaggcaggacatggaggaaaccgtggctttggaggaggtggtttcggtaac
ttctacaccagcgacggctacggaggcaactactcacactctcaagttgactggtggggc
aattag
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