Scomber japonicus (chub mackerel): 128354601
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Entry
128354601 CDS
T09718
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sjo04040
]
128354601 (scn1lab)
Ion channels [BR:
sjo04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
128354601 (scn1lab)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
Spem1
New_glue
Motif
Other DBs
NCBI-GeneID:
128354601
NCBI-ProteinID:
XP_053170790
LinkDB
All DBs
Position
24:14339620..14369356
Genome browser
AA seq
2017 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPESLAAIERRIAEEKARRPRVERHSDDDNGPKPNSDLEAGKSL
PFIYGDTPPHLVSTPLEDIDPFYSNQKTFIVLNRGKAIFRFNATPALYILSPFNPLRRVA
IRVLVHSMFSMLIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFCVG
KFTFLRDPWNWLDFSVILMAYITEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALI
QSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRVPPNGSVSVNDSMAMLFNSSLQ
NDTESFNYTEFISDENNYYSLPGRRDALLCGNGSGAGLCPEGFVCLKTGRNPDYGYTSFD
TFGWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLVNLILAVVAMAY
EEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQAGYSSFILVAAAAATESGEYSGRGGPT
SESSSGTSKLSSKSAKERRNRRKKRKQREEEEERGVCDKFHKSESEDSIKRSSFRFSIDA
NRLSYEKRCSSPNQSLLSIRGSLFSPRRNSRASLFSFRGRARDMGSENDFADDEHSTFEE
SDSRRGSLFLPRRLERRSSAVSQTSLGAPRIILPANGKMHCAVDCNGVVSLVAGTSVTTS
HVGLLLPEGTTTDTELKKRRTGFRQPSMDYLEEPGGRQRAMSVASILTNTMEELEESRQK
CPPCWYRFANTALIWDCCPAWLKIKDVVNSIVMDPFVDLAITICIVLNTLFMAMEHYPMT
EDFSNVLTVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGFIVSLSLMELGLANVE
GLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFG
KSYKECVCKISEECKLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFM
MVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQRGIAFVKSTVRQF
LQSVCFGGSGKGLAKESKPLDELHSNGKGNCVSNHTSVEISKDPSGVYTTEGNGRPGGGL
VVGAGVGGDSTGKYPMEECDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDVEG
SKEKLDVVPKHLSSSEGSTVDIRPPGDGVDSIELEPEESLDPEACFTEGCVSRFQCCQIN
EEEGHFKSWWNLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKNIKTVLEYS
DKVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSELTAIKSL
RTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYY
CVNTTTDEMLPIDRANNKTECLNLVNDSARWRNVKINFDNVGAGYLALLQVATFKGWMDI
MYAAVDSRDVEHQPQYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQD
IFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNAFQGCVFDCITKQAFDIVIMILICLNMVT
MMVETDDQTEDMDKILYWINLVFIVLFTGECVLKMISLRHYYFTIGWNIFDFVVVILSIV
GMFLSEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLL
FLVMFIYAIFGMSNFAFVKHESGIDDMFNFETFGNSMICLFQITTSGGWDGLLAPILNKR
EPDCDSQIEHPGTYYKGNCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESA
EPLSEDDFEMFYEVWERFDPDATQFMEYSKLSDFADALDPPLRMPKPNMIQLISMDLPMV
SGERIHCLDILFAFTKRVLGEGGEMDVLRGQMEERFMASNPSKVSYEPITTTLRRKQEDM
SATIIQRAFRRYMMRLAMKKASALYKEQLKEGIRDPDKDVMVISKFTENSTSDKTDMTPS
TASPPSYNSVTKSDKDKYEKENRDKENKGKDLKDRKK
NT seq
6054 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggacctgacagcttccgccccttcgtccccgagtcg
ctggccgccatcgagaggcgcatcgccgaggagaaggcccggagaccacgggtggagcgc
cacagcgacgatgataacgggcccaaacccaacagcgatcttgaggcggggaaatctctg
ccgttcatctatggggacacccctccccacctggtgtccactcctctggaggacattgac
cccttctacagcaatcagaagaccttcatagtattgaatcgcgggaaggcaatcttccgt
ttcaatgccactcctgccttgtacatcttaagccccttcaaccctctaaggagggtagct
attagagttttagtacactcgatgttcagcatgttgatcatgttcaccatcctgaccaac
tgtgctttcatgaccctcagtaaccccccggaatgggccaagaatgtagagtacacattc
acagggatttacaccttcgagtccctaataaagatcctggccaggggcttctgcgtggga
aagttcactttcctccgagacccatggaactggctggatttcagtgttatcctcatggcg
tatataacagagtttgtaaacctaggcaatgtttcagctctgcgaacgttcagagtattg
cgagctttgaaaacaatctcggttatcccaggcttgaagaccattgtcggcgctctgatc
cagtcggtgaagaagctgtcggacgtgatgatcctcaccgtgttctgcctcagcgtgttc
gccctcatcggcctgcagctcttcatgggcaacctgaggcagaagtgcgtgcgcgtgccg
cccaacggcagcgtgagcgtcaacgactccatggccatgcttttcaacagcagcctgcag
aacgacacggagagcttcaactatacggagttcatcagcgacgagaataattactattcc
ctccctggccgtagggatgctctgctctgtgggaatggcagcggcgccggtctttgtccg
gagggcttcgtatgtctcaaaacgggccgtaacccagactacggctacaccagcttcgac
accttcggctgggccttcctctctctgttccgactaatgacccaggactactgggaaaac
ctctaccagcagacgctgcgtgcggcagggaagccatacatgatcttcttcgtgctggtc
atcttcctgggctccttctacctggtcaacctgatcttggccgtggtggccatggcttac
gaggagcagaaccaggcgaccatcgaggaggctcagcagaaggaggaggagttccaggcg
atgctggaacagctgaagagacagcaggaggaggcacaggcaggatattcatctttcatt
ttagttgccgcggcagcagccacggagagcggagagtacagtgggagagggggccccacc
tcggagtcgtcctcagggacgtctaagctcagctcaaaaagtgccaaggagcggcgcaac
aggcggaagaagaggaagcagagggaggaggaggaggagaggggggtctgcgacaagttc
cacaagtctgagtctgaggacagcatcaagagatccagcttccgcttctccattgatgcc
aaccggctctcttatgagaagagatgctcctcacccaaccagtctctcctcagcatacgc
ggatccctcttctcgccgaggaggaacagccgcgccagcctgttcagcttccgcggccgg
gcgcgcgacatgggctcggaaaacgacttcgcagacgacgagcacagcaccttcgaggag
agcgacagccgccggggctccctattcttgccgcgccggctcgagcgccgcagcagcgcc
gtcagccagaccagtctaggggccccacggatcatactgcccgccaacggcaagatgcac
tgtgccgtagactgcaatggcgttgtgtcgctggtcgctggaacttctgtaacaacctcc
catgtaggtctactgctgcctgagggtacgactacagatacagagctgaagaaacggcgc
acaggttttcgccagccgtccatggattatttagaggaaccaggaggcaggcagagagcc
atgagcgtggccagcatcctcaccaacactatggaggagctcgaagagtctagacagaag
tgccccccctgctggtatagatttgcaaacactgctctgatttgggattgctgccccgca
tggttgaagatcaaggatgttgtcaactctattgtcatggacccatttgtggatctggca
atcacaatttgcatcgtcctcaacacccttttcatggccatggagcattaccccatgaca
gaagatttttctaatgttcttacagtcggaaacctggtgttcacagggatcttcacagca
gagatgtgcttcaagatcatcgccctggatccctactactacttccaggagggctggaac
atctttgacggcttcattgtcagtctgagtctgatggagctcggtttggccaatgtagaa
ggcttgtctgtgctcaggtcctttagattgctgagggtcttcaaactggccaagtcatgg
cccactctgaacatgctgatcaagatcattggtaactcagtgggggctttggggaatttg
actctggtgctcgccatcatcgtcttcatcttcgccgtggtgggcatgcagctgtttggc
aagagctacaaggagtgcgtatgtaagatttcggaggaatgcaagctaccccgctggcac
atgcacgacttcttccactccttcctgattgttttccgagtgctgtgcggagagtggatc
gagaccatgtgggactgcatggaggtggcaggacagagcatgtgcctgatcgtcttcatg
atggtcatggtcattggaaacctggtggttctaaacctattcctggctctcctcctgagc
tcattcagcgctgacaacctggcagcaaccgatgacgacagtgagatgaacaacctgcaa
attgctgtgggcaggatccagcggggtatcgcctttgtcaagtccactgtgcggcagttc
ctccagagcgtctgctttggggggagcggtaagggtctggccaaggagagcaaacccttg
gatgaactgcacagcaacggcaaaggcaactgtgtctccaaccacacttctgtggagatc
agcaaagaccccagtggggtgtatacgacagagggaaatgggcggccaggaggagggctg
gtggttggggccggggttggtggggacagtacagggaagtaccccatggaagaatgtgac
tacatgtcatttattcataaccccagcctgactgtcaccgtgcccatcgccgtgggtgag
tcggactttgagaaccttaacacagaagattttagcagcgactcgtcagacgtggagggc
agcaaagagaagctggacgtagtgcccaagcatctcagctcttcagaggggagcacagtc
gatatccgccccccaggagatggggtcgattcaatagagctagagccagaggagtcactg
gacccagaggcctgcttcaccgagggctgtgtgagtagattccagtgctgccagatcaat
gaggaggaaggccattttaagagctggtggaacctcaggaaaacctgctttatcatagtg
gagcacaactggtttgaatccttcatcatattcatgattctgctcagcagtggagcactg
gccttcgaggacatttacatcgaacagaggaagaacatcaaaacagtgctggagtactca
gacaaagtcttcacttacatcttcatcctggaaatgctgttgaaatgggtggcatacggc
ttcgtcaagtacttcaccaacgcctggtgctggctcgacttcctcatcgtagatgtgtcc
ttggtcagcctcgtagccaacgctctgggctactcagagctcaccgccatcaaatctctg
aggacactgcgagccctgcggcccctgagggctctgtctcggtttgagggcatgagggtt
gtggtgaacgctctgctgggggccatcccctccatcatgaacgtgctactcgtctgcctc
atcttctggctcatcttcagcatcatgggcgtcaacctgttcgcagggaagtactattac
tgcgtcaacaccaccacagacgagatgctgcccattgaccgggccaacaacaagaccgag
tgcctcaacttggtcaacgacagcgcccgctggaggaatgtcaaaatcaactttgacaac
gtcggggccggatacctggctctgctgcaagtggcaacatttaagggatggatggacatc
atgtacgcagccgtggactctcgagatgtggaacaccagcctcaatatgaagtcaacttg
tacatgtacctctactttgtcatcttcatcatctttggctcctttttcaccctcaacctc
ttcatcggtgtcatcatcgacaacttcaaccagcagaagaaaaagtttggaggtcaggac
atcttcatgacagaggaacagaagaaatactacaatgccatgaagaagctgggttctaag
aaaccacaaaaacctataccacggccaacaaatgcatttcaaggctgcgtgtttgactgc
atcacaaagcaggccttcgacatagtgatcatgatcctcatctgccttaacatggtgacc
atgatggtggagacggacgaccaaacagaagatatggacaaaatcctctactggatcaat
ctggtcttcattgtgctcttcacgggagagtgtgtgcttaagatgatctccctgcgtcac
tattacttcaccattggctggaatatatttgactttgtggtggtaatcctgtccattgta
ggcatgtttttatctgaagtcatcgagaagtactttgtgtctcctacgctgttccgagtg
atccgcctagccaggataggccgcatcctccgccttatcaaaggtgccaagggcatccga
acacttctctttgccttgatgatgtcacttcctgccctattcaacattggcctcctcctt
ttcctggtcatgttcatctacgccatctttggcatgtccaacttcgccttcgtcaagcat
gagtcaggaattgatgacatgttcaatttcgagacctttgggaacagtatgatctgttta
tttcagatcaccacctcaggtgggtgggatggcctgctggcacccatactgaacaagagg
gagcctgactgtgatagtcagatagaacacccaggcacctactacaaaggcaactgtggc
aacccatcagtgggcatcttcttcttcgtcagctacatcatcatttgcttccttattgtg
gtcaacatgtacattgccgtcatcctggagaatttcagcgtggcgacagaggagagtgcc
gagccgctgagcgaggacgactttgagatgttctacgaagtttgggaacgctttgatcct
gacgccactcaattcatggagtacagcaagctctctgactttgcagatgctctagatcca
ccgttacgcatgcccaagcctaacatgatccagctcatttccatggacctgccgatggtc
agtggcgagcgcatccactgccttgacatcctgtttgccttcaccaagcgagtgttgggt
gaaggcggcgagatggacgtgttacgtgggcaaatggaggagcgcttcatggcctctaac
ccctctaaggtgtcttatgaacccatcaccaccacgctccgccgcaagcaggaggacatg
tctgccacaatcatccagagagccttccgccgctacatgatgcgcttggccatgaagaag
gcctcggccctctacaaggagcagctcaaggagggaatccgtgacccagacaaggacgtg
atggtcatcagcaagttcactgagaactcaacctcggacaaaacagacatgaccccctcc
acagcctctccgccctcctacaacagcgtgacgaaatcggacaaggacaaatacgagaaa
gaaaatagggacaaagaaaacaaagggaaagatttgaaagaccgaaagaaatag
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