Scomber japonicus (chub mackerel): 128354940 Help Entry 128354940         CDS       T09718                                  Symbol col2a1b Name (RefSeq) collagen, type II, alpha 1b   KO K19719   collagen type II alpha Organism sjo  Scomber japonicus (chub mackerel) Pathway sjo04510   Focal adhesion sjo04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:sjo00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     128354940 (col2a1b)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     128354940 (col2a1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sjo00536]     128354940 (col2a1b) Glycosaminoglycan binding proteins [BR:sjo00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    128354940 (col2a1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  128354940 NCBI-ProteinID:  XP_053171027 LinkDB All DBs Position 3:23873953..23921339 Genome browser AA seq 1490 aa AA seqDB search MFSIMDSRTLLLLVATQVCLLAVVRCQEDDQEDAFTCIQDGQRYSDKDVWKPEPCRICVC DTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADTSPSIGVPGAKGQKGEPGDITDVVG PRGPAGPMGPPGEQGLRGSRGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQSG PMGPRGPSGSPGKPGDDGEAGKPGKSGERGPTGPQGARGFPGTPGLPGIKGHRGYPGLDG AKGETGAVGSKGESGASGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG PVGPVGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIPG SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEFGPAG LQGATGPQGEEGKRGPRGEPGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPSG ASGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG QPGVMGFPGPKGATGEPGKSGEKGLSGAPGLRGLPGKDGETGSAGPPGPAGPAGERGEQG QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGPQGLQG PRGLPGTPGTDGPKGAIGPAGSAGAQGPPGLQGMPGERGGAGIPGPKGDRGDIGEKGPEG ASGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFAG PPGADGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGATG FPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGPSGEKG DAGEDGPPGPLGPSGPQGLAGTRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGPGDRG PPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPVGAPGAPGAPGASG PVGPTGKQGDRGESGAQGPSGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFTG LQGLPGPPGQSGDQGATGPAGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRGGDTG PAGPPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDVEVDA TLKSLNNQIENIRSPEGSRKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTVDAIKVFCNM ETGESCVHSKPSTIPRKNWWSSKSKEHKHIWFGETMNGGFHFSYGDESLAPNTAAIQMTF LRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDG CTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGSDQEFGVDVGPVCFL NT seq 4473 nt NT seq  +upstreamnt  +downstreamnt atgttcagcattatggattcaaggactctactgctacttgtagcaacccaagtctgtcta ttagccgttgtgagatgtcaggaggacgaccaggaggatgcctttacctgtatacaagat ggacagcgttatagcgacaaggacgtatggaaaccagagccttgtcgcatctgtgtgtgt gacactggaaccgtcctgtgcgatgaaattgtctgcgaggagctaaaagactgccccaaa cctgaaatcccattcggagagtgttgccccatctgcgcagctgacacatctccatccatt ggagtacctggagctaagggtcagaaaggcgaacctggagacattaccgatgttgtagga ccaagaggaccagctggcccaatgggcccaccaggagagcaaggactccgcggatcaaga ggagataaaggagagaagggatcccctggtccccgtggcagagatggtgagcctggcacc cctggaaaccctggcccccctggacctccaggacctaatggaccccctggccttggtgga aacttcgctgctcagatggctggtggttttgacgagaaggctggcggcgcacagatgggt gtgatgcaaggaccaatgggccctatgggtcccagaggaccacctggccccagtggatca cctggcccacaaggtttccaaggtaacccaggagaagctggagagcccggacaatctggt cccatgggtccccgtggtccctctggatctcctggaaaacctggagatgatggtgaagct ggcaaacctggaaaatcaggggagcgtggacctactggacctcagggagctcgtggtttc ccaggaactcctggcctgcctggcatcaagggacacagaggttacccaggtcttgatggt gcaaagggagagaccggggctgttggttctaagggtgagtctggtgcttctggagagaat ggcgctcctggaccaatgggacctcgtggtttgcccggtgagagaggtcgtcctggaccc agtggagctgctggagcacgtggaaatgatggcttgcccggtcctgctggtcccccaggt cctgttggtcctgttggagctccaggcttccctggctctcctggtgcaaagggagaggcc ggtcctactggtgctcgtggacctgagggtgctcagggaccccgtggagagtctggcact cctggatcacccggaccttctggagcttctggaaaccccggtactgatggtattcctgga tctaaagggtcagctggtgctcctggtattgctggtgcgcctggtttccccggacctcgt gggcctcctgggcctcagggagcaactggacctctcgggccaaaaggaacatctggagac ccaggtattccagggttcaagggagaggctggacccaaaggagaatttggaccagctggt cttcagggagcaacaggcccacaaggagaagaaggcaagagaggacccaggggtgagccc ggtgctgctggaccacttggacctcccggagagagaggatccccaggtaaccgtggtttc cctggacaagatggtcttgctggtcccaagggagcccctggtgagcgtggaccctctggt gccagtggtcctaagggtgctaacggtgaccctggccgtcctggagaacctggtctgcct ggtgccagaggtcttaccggacgtcctggtgatgccggtcctcaaggcaaagttggacct tctggagctcctggtgaggatggtcgcccaggaccccctggcccacagggagcccgtgga cagcctggtgtcatgggattccctggacccaagggagcaactggtgagcctggcaagtct ggtgagaaaggtctgtctggagctcccggtctgagaggtctgcctggcaaagatggagaa actggctctgctggaccccctggccctgctggccctgctggagagagaggagagcaagga cagcctggtccctcaggcttccagggtctgcctggaccacctggcccacctggtgaggga ggcaagcccggagaccagggtgttcctggagaagctggagctgctggtgctactggaccc agaggggagcgtggtttcccaggagagagaggagctgcaggtcctcagggtcttcaggga cccagaggtctgcctggaactcctggaacagatggacccaagggagccattggacctgct ggttctgcaggagctcagggaccccccggcctgcagggtatgcctggagagagaggaggt gctggcattcccggacccaaaggagacagaggtgacattggagagaaaggacctgaaggt gcttccggcaaagatggtgccagaggtctcactggtcccatcggtcctcctggccctggt ggtcccaatggtgagaagggtgaatctggacctgctggtccttctggtgctcctggtacc cgtggtgctcctggtgacaggggtgagactggaccacctggacctgctggatttgctgga ccacctggtgctgatggtcaacctggaaccaaaggagagcagggagaatctggacagaag ggtgacgctggtgcccctggaccccaaggaccatctggtgcccctggacctgccggtcct acaggtgtttctggacctaaaggtgctcgtggtgctcagggacctcctggtgccactggt ttccctggagctgccggtcgcgtcggaccccctggccccaatggtaatcctggacctgct ggtcctgccggccctcctggtaaagatggacctaagggtgtgagaggagacggtggaccc ccaggcagacagggtgatgctgggcttcgtggtcccgctgggccttcaggagagaaggga gatgctggagaggatggtccccctggtcccctaggtccttcaggtcctcagggtttggct ggcacacgtggtattgtgggtctacctggacagcgtggtgagagaggtttccctggtctg cctggaccttctggtgagcccggaaagcaaggagcttctggtggccccggagaccgcgga ccccctggacctgttggaccacctggactcactggaccagcaggagagcctggcagagag ggcaaccccggatctgatggacctcctggtagagatggtgctactggaatcaagggtgat cgtggtaacactggtcctgttggtgctcctggtgctccaggcgcccctggtgcttctggc ccagttggccccaccggcaaacagggagacagaggagagtctggtgcacaaggaccttct ggacctccaggacctgctggagccagaggaatgcctggaccccaaggaccccgtggtgac aagggtgaagctggagagtctggtgagagaggacagaagggacacagaggcttcactggt ctgcagggtctgcccggacctccgggtcaatctggagaccagggtgctactggacctgct ggaccttctggacaaagaggaccacctggacctgttggccctgctggaaaggacggttca aacggtctgccaggacccattggaccccctggaccccgcggtcgtggtggagacaccggt cctgctggtcctcctggaaacgccggaccccctggtcctcctggtccccctggccctggc attgacatgtctgccttcgctggcctgggtcagactgagaagtcccctgatcctctcagg tacatgagagccgaccaggcctctggaaacctccgccagcatgatgttgaggtagacgcc acgctcaaatccctcaacaaccagattgagaacatccgcagccccgagggatccagaaag aaccccgctcgcacctgcagagacctgaagctctgccatcctgactggaagagcggagac tactggattgatcccaatcagggttgcaccgttgatgcaatcaaggtcttctgcaacatg gagacaggggagtcctgcgtccattccaagccttcaaccatccctcgtaagaactggtgg tccagcaagagcaaggagcacaaacacatctggttcggagagacaatgaatggaggtttc cacttcagctacggtgatgaaagcctggcacccaacactgctgccatccagatgactttc ctgagactgctgtccactgaggcgtctcagaacctaacctaccactgtaaaaacagcgtg gcctacatggatgcctcaacgggcaacctgaagaaggccgtgctactgcagggttccaac gatgtggagatcagagccgagggcaacagccgcttcacatacagcgtgatggaggatggt tgcacgaaacacacgggacagtggggcaagacagtgattgaatatagatcacagaagacc tctcgtctgcccatcgtggacattgcccccatggatatcggtggatcagaccaggagttc ggagttgatgtcgggccagtctgcttcttgtaa

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