Scomber japonicus (chub mackerel): 128354989
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Entry
128354989 CDS
T09718
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sjo03036
]
128354989 (chd5)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
128354989 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
128354989
NCBI-ProteinID:
XP_053171097
LinkDB
All DBs
Position
3:complement(29589529..29623930)
Genome browser
AA seq
2002 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDMPDEDDEVERNTVPLTPLDSFFSDDESLKQQKKKKPKKMK
EGKMPKVKKRKKEGGIQARVDSDLEETSEVEEERERPEIGSESESSMYGPTKKKKKKPKE
KKEKKPRKKKRDEEDDDDDDDDGNLKEPKSSSQLMQEWGLEDVQYGFTEDDYKTITNYKA
FSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVA
QPTSVSSSQPSSQLGPIKKAKTKEGKGPGVRKRSKSVKEVKKKAKPKKTKSKSGQSGKKK
KASSSEEDYLEESDFDDISIHSASVLSDTSGAATKKKARRGRKKRKKEDGDGYETDHQDY
CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDDDEEEEE
APGEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLK
GKVQKILHWTWGEPPLPAELPVGPDGKPTDPLTKPPLKGHPEREFFVKWAGLSYWHCSWV
SELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRKSKDPQYAVMEERFYRYG
IKPEWMVMHRILNHSFDKDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYDGHKACYWDHRE
QILGEDQRPLVVRKGKRLKDDHQKREVPPDAPIIDPTIKFEHQPWYINATGGTLHPYQLE
GLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWER
EFEMWAPDFYVVTYTGDKDSRAIIRENEFTFEDSAVKSGRKVFRMKKDTPIKFHVLLTSY
ELITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEEL
FHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTEL
IVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEA
PVLPNGSYDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEYEGYK
YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHN
DIQAFSRAHRIGQNRKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSK
QELDDILKFGTEELFKDEMEAARTLGGDNKDGEEGNVIHYDDDAISKLLDRSQDATEDTE
IQNMNEYLSSFKVAQYVVKEEDGEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLAR
NLGKGKRIRKQVNYNDTTQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQ
LKSEKDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGK
SEREFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEH
VNGKLSSPDLIPIGMELKKLTESVSSDPNTPVPASPIATQPGTPIPPEKTESLLFTTEDK
ETSEQDSKKLSEQETSSAEAASVSEKAADSEESKASSEEKTGDERDRTESPSKKNEPSVN
SKEATLRQSELSASQTSPKVELCKETEKSSEKGDTDFPLAKAEDKENKPDDVKNEDALEG
RLNGDKDTLDEMDESRREDRNGFKAKFMFNIADGGFTELHTLWQTEERAALSSGKMHDIW
HRRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEMHKGNYLEMKNKFLARRFKLL
EQALVIEEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAV
LHKVLNQLEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGSEPPPQQPF
SQGGFGCSQMYSSSFGGGFRGPGGQPMVNYSQMPLGPYVSVSSNGPPPPTSHLDKKSLDS
LRDVATPDLKSAKPSDVICIED
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagtaatgaagacgagggacaagacgacatggattttgaagacgat
atgccagatgaggatgacgaagttgaacgaaacactgttcccctcacgccgctcgacagc
ttcttctctgatgatgagtcactcaaacaacaaaagaagaagaagcccaaaaagatgaaa
gaagggaaaatgcccaaagttaagaagaggaaaaaggagggaggaatccaggcaagagtc
gacagcgacctggaggagacgtcagaggtggaagaagagcgggaacgtccagaaataggc
tctgagagtgagagtagcatgtatggccccaccaaaaagaagaagaagaaaccgaaggaa
aagaaagagaaaaaaccccggaagaagaagagagacgaagaagatgacgatgacgacgat
gatgatgggaacttgaaagaacctaaatcatccagccaattgatgcaagagtggggtctc
gaagacgttcagtatggcttcactgaagacgactataaaaccatcaccaactacaaggct
ttcagccagttcctcaggcctcttattgccaagaagaacccgaagattcccatgtcaaag
atgatgacagtgttaggggccaagtggcgagaattcagtgccaacaacccgttcaaaggc
gcatctgcaaccgctgtggccgccgctgtggccgccgctgtggaaacggttaccgtggca
cagccaacgtctgtcagcagcagccagccgagctctcagctggggccaatcaaaaaagcc
aaaaccaaagagggaaagggaccaggagttagaaagagaagcaagagtgtaaaagaggtg
aagaagaaagcgaagccgaaaaagaccaaatcaaagtcgggccaaagtgggaagaagaag
aaagcatcctcgagtgaggaggactatctggaggagtcagactttgatgacatcagcatc
cacagtgcctctgtgctttctgatacctcgggggccgccaccaagaaaaaggcccgacgt
gggcggaaaaaaagaaaaaaggaggatggggacggctatgagacagaccaccaggactac
tgtgaggtttgccagcagggtggagagatcatcctgtgtgacacttgtcccagagcgtac
cacctggtctgcctggaccctgagttggagaaggcccctgagggcaaatggagctgtcca
cactgtgagaaggagggaatccagtgggaggcaaaggatgatgatgaggaggaggaagag
gcaccaggagaggaagaagatgaccacatggagttttgcagagtgtgtaaagatggagga
gagctactgtgctgtgacacctgcccatcatcctaccacatccactgtctcaacccacct
ctgcccgagatacccaacggagagtggttgtgtccacgctgcatgtgccctcctctaaaa
ggaaaagtacaaaagattctccactggacatggggagaaccgccgctgccagctgagctg
cctgtaggccctgatggcaagccaacagacccactgaccaaacccccactcaagggtcac
ccggagagggagttctttgttaagtgggccggcctttcgtactggcactgctcctgggtc
agcgagctgcagttggagctgtaccacaccgtgatgtatcggaattaccagcgtaagaac
gacatggacgaacctccgccatatgactacggctcaggagaggaggagctcaacaacgag
aagagaaagagcaaagacccccagtacgctgtgatggaggagcgcttctaccgctacggc
attaaaccagagtggatggttatgcacaggatactcaaccacagttttgataaagatggg
gatgtgcattacctgatcaagtggagagacctgccctatgaccagtgcacctgggaggtg
gatgattttgacgtcccggaatatgacggtcataaagcttgttactgggaccacagggag
caaattctaggggaggaccaacgccccctggtggtgaggaaaggaaagagactcaaagat
gaccatcaaaagagggaggtccctcctgatgctccaatcatagatccaacaatcaagttt
gagcatcagccgtggtatattaatgccactggaggaacactgcacccataccagctggag
ggcctgaactggttgaggttctcctgggctcagggcacagataccatcctggctgatgag
atgggtctagggaagacggtgcagacaatagtgtttctctactccctttataaggagggt
cactctaaggggcccttcttggtgagcgcacccctctcaactatcatcaactgggagagg
gaatttgagatgtgggctccagatttttatgtggtgacgtacaccggtgacaaagacagc
agggcaatcatcagggagaacgagtttacctttgaagacagcgcagtaaaatcaggaaga
aaagtgttccgcatgaagaaagacactcctatcaagttccatgtgctgctgacatcctat
gagctgatcacaatagatcaagccattctgggctccatcacctgggcctgtctggtggta
gatgaggcccacagactgaaaaacaaccaatcaaagtttttcagaattctcaacgggtat
aagatctactacaagctgctgctgactgggactcctcttcagaacaacctggaggagctg
ttccacctgcttaacttcctcaccccagagcgtttcaataacctggaaggctttctggag
gagtttgccgacatatctaaagaagaccagatcaagaagctccacgacctgctcgggcct
cacatgctcaggaggctgaaagctgacgtcttcaagaacatgcctgcaaagacagagctg
attgtcagagtggaactcagcccaatgcagaaaaaatattacaagttcatcttgacgcga
aattttgaggctctgaactcaaagggaggagggaaccaagtatccctgctcaacattatg
atggacctgaagaagtgctgcaaccatccctacctgttccctgtggctgctgtggaggct
cctgtattgcccaacggttcttatgacggcaacctactggtgaagtcctcaggaaaactg
actctgcttcagaaaatgctgaagaaactcaaagatgaaggacacagggttcttattttc
tctcagatgacaaagatgctggatctgctggaggattttcttgagtacgagggttataaa
tatgagcgtattgatggagggattactggaggcctaaggcaggaggccattgaccgtttc
aatgcaccgggcgctcagcagttctgcttcttgctttccacacgtgctggaggtcttggc
atcaacctggccagtgcagacactgtaatcatctacgactctgactggaatccccacaat
gacatccaagcttttagcagagcccaccgcattggccaaaacaggaaggtgatgatctat
cgatttgtgacgcggggctcagtggaggagcgaatcactcaggttgcgaagaggaagatg
atgctgacccacctggtggtacggcccggcctgggctccaaaactggctccatgtccaaa
caagaactggatgacatcctcaagtttggcacagaggagctgttcaaggatgagatggaa
gcagcacgaaccctggggggtgacaacaaagatggtgaggagggcaatgtgattcactat
gacgacgatgccatctcaaagctgttagaccgaagccaggatgccactgaagacactgag
attcagaacatgaacgagtacctgagctccttcaaggtggctcagtatgtggtgaaagaa
gaggacggagaggaggaggtggagcgggagataatcaagcaggaggagaacgtggaccca
gactactgggaaaaactcctccgccatcactacgagcagcagcaggaggatctggcccgc
aacctgggcaagggcaaacgcatccgaaagcaagtcaactacaacgatacgacccaggag
gaccaagagtggcaggatgatctttcagacaatcagtcggagtactctgtggggtccgag
gacgaggacgaagatttcgaggagaggcctgaaggtgggcgcagacagtctcgccggcag
ctgaagagtgagaaagacaaaccgctgcctcccttgctggcacgtgttgggggcagtatt
gaggtcctgggcttcaatgctcgccagaggaaagccttcctcaatgccatcatgcgttgg
ggcatgcctccacaggatgctttcaactcccattggctggtgagggacctgagagggaag
agtgagcgtgaattcagggcctacgtgtctctgttcatgagacatctatgcgagccgggg
gcagatggagcagagacctttgctgatggagtcccacgtgagggactatctcgtcagcat
gttctcacccgaatcggagtcatgtcccttgtcaggaaaaaggtgcaagaattcgagcat
gtaaatggaaagctgagttctccggatctgattcccatcggcatggagctaaagaaactg
actgaaagtgtatcttctgatcccaacacccctgtgccagccagtcccattgctacgcag
cccggcacccccattcctccagagaagaccgagtctctcttgttcaccactgaggacaag
gagacctcggagcaagatagcaagaaactgtcagagcaggaaacttccagcgcagaggcg
gcatctgtatctgagaaagcagctgacagtgaagagagcaaggccagctcagaggagaaa
acaggagatgagagggacagaaccgagtcgccctccaaaaaaaacgagccatctgtcaac
tcaaaagaagccactttgagacagtcagaactatcagccagtcagacctcgccaaaagtg
gagctctgcaaagaaacagagaaatcttcagaaaaaggagatactgattttcctctggca
aaagcagaggacaaggaaaataagccagatgatgtgaaaaatgaagatgcattagagggg
cgattaaacggagataaagacacgctggatgagatggatgagagcaggagggaggacaga
aatggatttaaagccaagttcatgtttaatatcgctgatggcggttttacagagttgcac
accctttggcaaactgaagagcgagcggcgctgtcttctggaaagatgcatgacatctgg
catcgtcgccatgactactggctgttggctggcatcgtaacacacggctatgctcgctgg
caggatattcagaatgacccacgttacgctattctgaacgagcccttcaagacggagatg
cataagggcaactacctagagatgaagaacaagttcctggctcgtcggtttaagttgttg
gagcaagctctggtgattgaggagcagcttaggcgggcggcttacctgaatatgacccag
gaccccagtcacccagccatggctctcaacacacgcttcgctgaggtggaatgtctggcg
gagtcccaccagcacctgtccaaagagtctctggcagggaacaagcctgccaatgccgtg
ctgcacaaagtgctgaaccagctggaggaacttctgagtgacatgaaagcagatgtgaca
cgactgcccaacatgctgtccaggatcccgccggtgtcggcccgcctgcagatgtctgag
aggagcattctcagtcgcctcaccagccgaggcagcgaacctccaccgcaacagcctttt
agccagggcgggtttggctgctcccagatgtacagcagcagctttggtggaggattcaga
gggccaggtggacagccgatggtcaactacagccagatgcctctgggaccatatgttagt
gtgtcatctaatggccccccaccccctacaagccatttggacaagaagtcacttgactcc
ttgagagatgtggccacgcctgatctcaagtcagccaaacctagtgatgtcatctgcatt
gaagactag
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