Scomber japonicus (chub mackerel): 128355083
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Entry
128355083 CDS
T09718
Symbol
rbl1
Name
(RefSeq) LOW QUALITY PROTEIN: retinoblastoma-like protein 1
KO
K04681
retinoblastoma-like protein 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04110
Cell cycle
sjo04218
Cellular senescence
sjo04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
128355083 (rbl1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
128355083 (rbl1)
04218 Cellular senescence
128355083 (rbl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128355083 (rbl1)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
128355083 (rbl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
TFIIB
Serglycin
Rb_C
Motif
Other DBs
NCBI-GeneID:
128355083
NCBI-ProteinID:
XP_053171239
LinkDB
All DBs
Position
3:32630215..32647752
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AA seq
1065 aa
AA seq
DB search
MRGEESSDSESGRMEESSVRRSLETLCQELNMDEQTATEAMDNFTAIWDTYTLEGEVVHW
LACSLYAACRKGSTPTVGKGLMEGNCVSLTRILRSSKLSLIQFFSKMRKWADMSNLCQDF
RLRMDRLERNFEVSTVIFRKFEPIFMDMFQNPGGEPPRQPRSRKHRRLPCHISDVFKFCW
TLFVYTKGNFRMIGDDLVNSYHLLLCCLDLVFGNALLCANRKDLINPTFRGLPAAYRTDG
HVSQDGLPPCVLDKLCELHDGLVVEAKGIKQHYFKPYIQKLFQKQILKGNDELLTEMLDP
QNFIDNNKAINREYEEYVLTVGDFDERVFLGADADEEIGTPRKIVQEPSASQTTAHSQLQ
QHVEKSGSLAPSTPLTGRVYLKEKDLLVTPVSSATQSVTRLQSMVAGLRTAPSDHLTQIF
KSCSRDPTESILARVKTLGQTFKEHYTNDSEDTSGSHIDFAENRLKLAEILYYKILEYVM
VQETKRLHGKDMSVLLEQDIFHCSLMACCLEVVLFSYSSQRTFPWIINVFKLPPFYFFKV
IEVFIRSEEGLSRDMVKHLNLIEEQVLESRAWTADSSLWSALQAAGNKVPTVEEVNFTSS
LDSGSGSGSSSGSSLGVQSHLPLVALSPIIHPRIXEFRSGLGSARKDVPPSPLSVHDRYS
SPAAGSAKRRLFGDDPPAVTSSLITGLSPMSSPAKRLTFGSSSTLKIGGPGSQTTVLSFP
LQGLSNERTVTLIPVQPCDSSGTITAQFLLTASPSRAAAVTSDPXQTGSGRPRRTGSLAL
FFRKVYHLASVRLRDLCVKLDVSSELRGKIWTCFEHSLVHATDLMRDRHLDQLLLCSVYI
ISKITKETHTFQDIMKCYRSQPQASSHVYRSVLLRRTPREQVADENMEVDPASGGESAEK
TNQVSGAANADQSGEEERGDLIQFYNSVFVLKMKSFALRYATHDNRADAPPLSPFPSVRA
QPLSPRRISQRHSLYVSPHKNSAGCLTPNSYTYRINSSPSKELSDINRMIRQGSVSRKRA
FTMEGDMMMSSACDSPSKRACPENGSSPDVLLKRLQDVVSERQSH
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgcggggagaagagtcgtctgattccgagtcggggaggatggaggagagctcggtccgg
aggagtttggagacgttgtgtcaggagttgaacatggacgagcagacggccactgaagcc
atggacaacttcactgccatctgggacacatacacactggagggagaagttgtccactgg
ctcgcctgttctctgtacgcagcctgcaggaaaggatccactcccaccgtcggtaaagga
ctgatggagggaaactgtgtctctctcaccaggatcctccgctcctccaaactcagtttg
atccagttcttctctaaaatgaggaagtgggccgacatgtccaacctgtgtcaggacttc
cggctgcggatggatcggctggagcgcaacttcgaggtttccacggtgatattccgcaag
ttcgagccgatcttcatggatatgtttcagaatccgggaggagagccgccgaggcagccg
cgcagcaggaaacacagacggttgccgtgtcacatcagtgatgtgttcaagttctgctgg
acgctgtttgtctacacaaaaggtaacttccgtatgatcggtgatgacctggtgaactcg
taccacctgctgctctgctgtctggatctggtgtttggcaacgctctgctgtgtgcaaac
aggaaggacctcatcaaccccacattcagaggtctaccggctgcctaccgcaccgacggc
cacgtttcccaggacgggcttcctccgtgcgtgttggataagttgtgcgagctgcatgac
ggactggtggtcgaagcgaaaggcatcaaacagcactacttcaaaccttacatccagaaa
ctcttccagaaacagatcctgaaaggtaacgacgagcttttgacagaaatgctggatcct
cagaacttcattgataacaataaagccataaacagagagtatgaggagtacgtgttgacg
gtgggagactttgatgagcgagtgtttctcggagccgacgccgacgaggaaatcggcacc
ccgaggaaaatcgttcaggaaccttcagccagtcagacgacggctcacagccagctgcag
cagcacgtagagaagtcgggctctctcgccccctccacccctctaacaggtcgagtctac
ctgaaggagaaggacctgctcgtcacgcccgtttcctcggcgacgcagagtgtcacccgg
ctacagagcatggtggccggtttacggaccgcacccagcgatcacctgacgcagattttc
aagtcttgctccagagatccaaccgagtccatcctggctcgagtcaagacgctcggacaa
acctttaaagaacattacaccaacgactcagaggacacgtccgggtctcatatagatttt
gcagagaaccgactgaagcttgctgagatcctttactataagatcctggagtacgtcatg
gtgcaggagaccaaacggctgcacggcaaagacatgagcgttttattagagcaggatatc
ttccactgctccctgatggcttgctgtctggaggtggtgttgttctcctacagctcccag
agaaccttcccctggatcatcaacgtcttcaagctgccccccttctacttctttaaggtg
atcgaggtgtttatccgctcagaggagggtttgtccagagacatggtgaagcacctgaac
ttgatcgaggagcaggttctggagagcagagcatggaccgctgactcgtccctgtggagc
gctctgcaggccgccgggaacaaagtgccaacagtggaggaggtgaattttacctccagt
ttagactctggttctggttctggttctagttctggttcttctttgggagttcagtcccac
cttcctctggtcgctctctcacccatcatccacccccgaatcnaggagttcaggtcagga
ctgggcagcgctcgaaaagacgttcctccctctcctctctcggtacatgacaggtacagc
tcgccggcggccggcagcgccaagcgtcgtctcttcggtgacgaccctccggctgtgacg
tcgagtttgatcacaggtttgagtccgatgtcgtctcccgccaaaaggctgacgtttgga
tcgagcagcactctgaagatcggaggtccgggttctcagaccaccgtcctgagtttccca
ctgcaaggtttaagtaacgagcgcaccgtcacgctgatcccagtccagccctgtgactct
tcaggaaccatcacggctcagttcctgctgaccgcctcaccgagccgtgctgcagccgtg
acctctgaccccnnccagacaggaagtggacggccgagacgcaccgggtcactcgctctg
ttcttcaggaaggtgtatcatctagccagtgtgcgtctcagagatctgtgtgtgaagctc
gacgtttcctcggagcttcgagggaagatctggacgtgtttcgaacactctctggttcac
gccaccgacctgatgagagaccgacacctggaccagctgctgctctgcagcgtctacatc
atctccaaaatcactaaagagactcacaccttccaggacatcatgaagtgttatcgcagc
caaccacaagccagcagccatgtttaccgcagcgtcttactgcgtcggactcccagagaa
caggtggccgatgagaacatggaggtggatcctgcatcaggtggcgaatccgcagagaaa
accaatcaggtttcaggagcagccaacgccgaccaatcaggagaggaggagcgcggtgac
ctcatccagttctacaacagcgtcttcgtgctgaagatgaaaagcttcgctctgcgttac
gctacacacgataaccgggcggacgctcctcctctctctccgttcccgtcggttcgagct
cagcctctgtctcctcgtcgcatctctcagagacactcgctctacgtttctcctcacaag
aactctgcaggctgcttaacacccaactcctacacgtacaggatcaacagcagcccgtcc
aaggagttatcggacatcaaccgaatgatccgtcagggcagcgtgagcaggaagcgggcg
ttcaccatggagggcgacatgatgatgtcatcggcgtgcgactcccccagtaagagggcg
tgccccgagaacggcagcagccccgacgtcctgctgaagcggttgcaggatgtcgtgtcg
gagcggcagagtcactga
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