Scomber japonicus (chub mackerel): 128355280
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Entry
128355280 CDS
T09718
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
128355280
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sjo02000
]
128355280
Transporters [BR:
sjo02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
128355280
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GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
128355280
NCBI-ProteinID:
XP_053171502
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Position
3:20621597..20628641
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AA seq
604 aa
AA seq
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MSLVNPGTRAGPTPPKPQEREQWTSKVEFILAVAGHIVGLGNVWRFPYLCYKNGGGVFFI
PYILFLFTCGIPLFFLETSLGQFTSQGGITCWRKICPLFEGLGYGSQVVVLYTGVYYIII
LAWTFLYLFSSFKSELPWASCHNDWNTGDCFEYSHNQTSSLLLHGNSTSSVVEFWEKRIL
GLSGGIEEIGNIRWDLALCLLLAWILCYFCVWNGVKTTGKVVYFTATFPYVMLVVLLVRG
LTLPGAKEGIMFYLYPDPSRLTDPEVWMDAGSQIFYSYGVCTGVLTSLGSYNKYSNNCYR
DCVYLCLLNSLTSFIAGFAIFSVLGFMAKEQGVDISMVAESGPGLAFIAYPRAVALMPLP
QLWAIFFFVMIIFLGLDSEFVYQEALVTTISDMYPSFFQNNCRRKLLLLAISVGSFFVGL
LMVTQGGLYIFQLFDYYACSGMTLLLFAVIQSVCIGWIYGADRHYDNIKDMIGYRPWPFM
KYCWQYITPAICTCTFVFSLVKYTPLKFNNTYEYPWWGYAIGGFFTLSSTLMVPLWMLYA
LSVTPGTLRQRVTILCTPSKDLPSAMSKKLSNQEAFQTFTGLYTLRVTENSEDRDGRAQR
SSII
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgagtctggtgaaccctgggaccagagcaggacctactccacccaaacctcaggagagg
gagcagtggaccagtaaagtggaatttatcctggcagtagcgggacacattgttggtcta
ggaaatgtctggaggtttccttacctttgctacaaaaatggaggaggggttttcttcata
ccttatattttgttcttgttcacctgtggtattccactcttcttcctggagacatctttg
ggacagttcaccagtcaaggtggaataacttgctggagaaaaatctgccctctttttgaa
ggcttaggctatggcagccaagtggttgttttgtacactggggtatattacatcatcata
ctggcttggacattcctctacctgttttcatccttcaagtctgagcttccatgggcgagt
tgtcacaacgactggaacacaggtgactgttttgagtacagtcacaatcaaacatcctct
ctgcttctgcatggaaatagtacctcttcagtcgtagaattttgggagaagagaatcttg
gggctgtctggtggaattgaagaaattggtaatattcgctgggatttagctctttgtcta
cttcttgcctggattttgtgctacttctgtgtgtggaatggagtaaagaccactggaaag
gtggtttacttcacagccacatttccatatgtgatgctggtggtgttgcttgtccgtggt
cttacattaccaggggccaaagagggaataatgttctatctctacccagatccatcccgc
ctcactgatccagaggtatggatggatgctggcagccaaattttctactcctatggagtc
tgcacaggtgttttgacatctttaggaagttacaacaaatatagcaacaattgctacaga
gactgtgtttacctgtgcctgttaaacagtttaacaagctttatagctggctttgccatc
ttttctgtccttggtttcatggcaaaagagcagggtgtggacatatccatggtggctgaa
tcaggtccagggttggcattcattgcttatcctcgtgctgtggctctaatgccccttccc
cagctttgggccattttcttctttgtgatgatcatcttcttaggattagacagtgagttt
gtatatcaagaggcgttggtcacaaccatctccgacatgtatccttccttctttcaaaac
aactgccgccgcaaactacttcttcttgccattagtgttggaagtttctttgttggcctt
ctgatggttacacagggaggcctttatatattccagttgtttgattactatgcctgcagt
gggatgacactcctactttttgctgttattcagtctgtctgtattggatggatctatggt
gcagatcgtcattatgataatataaaggacatgattggatatcgaccgtggccttttatg
aaatactgttggcagtacatcacaccagctatctgtacttgcacatttgtcttttccttg
gtcaaatatacaccactcaaattcaacaacacttatgaatacccgtggtggggctacgcc
attggaggattctttactctctcgtcaactctcatggttcctctgtggatgctgtatgct
ctgagtgtcactcctggaacactgagacagagagtgacaattctgtgcactccatcaaaa
gatctgccttctgcaatgtcaaagaagttgtcaaatcaagaagcatttcagactttcaca
ggcttgtacacactccgcgtgacagaaaattctgaagacagagacggcagagctcagaga
tcatctattatttaa
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