Scomber japonicus (chub mackerel): 128355308
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Entry
128355308 CDS
T09718
Symbol
samd4a
Name
(RefSeq) protein Smaug homolog 1
KO
K27396
protein Smaug
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128355308 (samd4a)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128355308 (samd4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
SAM_3
Motif
Other DBs
NCBI-GeneID:
128355308
NCBI-ProteinID:
XP_053171532
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All DBs
Position
1:complement(34980026..35046313)
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AA seq
723 aa
AA seq
DB search
MMFRDQVGVLASWFKGWNECEQTVALLSLLKRVSRTQARFLQLCLEHSLAECTELQVLEG
EANNPGVISQWQSEPKERVISLVLTHLPLLKPGNIEAKGEYMRLLPRILAHTIEHGHHLE
ESRQLLSYALIHPATSLEDRAALALWLNHLEERAAARGDSLERPPPSGPHHHHQSTPPST
LTSSGSSSSSTNNSSSGNLYSLHHHQRYGSDDRLNGWQSSRDSGLGGGWHQQQQGCENGH
LLLYPSSSVPATINTVGTGGGGNTILTSGGGSQQHSPLKRSVSLTPPMSGPSNQPLGHVW
LSQEDLPTARGPALDHAPLSPQSSIASSGSGGSEHLEEAGLGGGSSLHRSSFHEEGSGMR
DVPAWLKSLRLHKYAALFSTLTYDEMMSLTEEQLEAQKVTKGARHKIVISIQKLKERQNL
LRSLEKDVLEGSNLRAPLQELHQMIMTPIKAFSGGEEASLQRPLLTPEGKSAAPGSHLAG
GGGEAESGTSLIAEGDLPGQFTRVMGKVCTQLLVSRSDEDNISSYLQLIDKCLIHESFTE
TQKKRLLSWKQQVQRLFRSIPRKTLLDIAGYRPQRSRGFGQSNSLPTASCVGSSVSARRS
LRQFQMPSRSLPGARLSLLGSGGLLGPTPRSSSSTPTGPKQGRQGLWFANPGGSNSMPSR
THSSVQRTRSLPVHTTPQTMVMFQQADLQLPVTEPDINNRLESLCLSMTEHALGDGADRT
STI
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttcgcgaccaggtgggcgtgttagccagctggttcaaggggtggaacgagtgc
gagcaaacggtggctctgctgtccctgctgaagagggtgagccggacccaggcccgcttc
ctgcagctctgtctggagcactctctcgccgagtgcaccgaactgcaggtcctggaggga
gaggccaacaacccaggtgtgataagccaatggcagagcgagccgaaagaacgcgtcatc
tcgctcgtcctcacacatctcccgctcctcaaacccggcaacatagaagccaagggtgag
tacatgcgcctgctgcctcgcatcctggcccacaccatcgagcacggccaccacctggaa
gagtcccgccagctcctgtcctacgccctcatccaccccgccacctccctggaggaccgc
gccgccctagcgctctggctcaaccacctggaggagagggcagccgccaggggagactcc
ctggagagaccacctccctcaggtcctcaccaccaccaccagtctacacctccatccacc
ctcacttcgtcaggatcctcctcttcctccaccaacaactcttcgtcaggaaacctctac
tctttgcatcaccaccagcgctacggctcggacgaccgcctcaacgggtggcagagctcc
agggactcggggctgggcggaggctggcatcagcagcagcagggctgtgagaacgggcac
ctgctgctttacccgtcgtcctctgtgccggcaaccatcaatacggtgggaaccggtgga
ggcggtaacactatcctgacgagcggaggcggcagtcagcagcacagtcccctgaagcgc
tccgtgtctctcacccctccgatgagcggccccagcaaccagcctctgggccacgtctgg
ctctctcaggaggacctaccgaccgccagaggccccgccctggaccacgcgcccctgtct
ccccagagcagcatcgcctcctcaggtagcggaggcagcgagcacctggaagaggccggt
ttaggaggaggctcaagtctgcatcgtagctccttccacgaggagggcagcggcatgaga
gatgttcctgcgtggctgaagagtctccgtctccacaagtacgctgcgctcttctccacc
ttgacctacgatgagatgatgtcactgactgaagagcagctcgaagcacagaaagtcacc
aaaggagcaagacacaagatcgtcatcagcattcagaagctcaaagagaggcagaacctc
ctacgcagcttggaaaaggacgtgttggagggcagtaatctgcgtgccccgctacaggaa
ctccaccagatgatcatgacacccatcaaggctttcagcggtggtgaggaggcctccctg
cagcgcccccttctgaccccagagggcaaaagcgccgcacctggctcccacctggcagga
ggcggaggggaagctgagtcaggcaccagcttgattgcagagggggatctacctggccag
ttcactcgtgtcatgggcaaagtttgcacccagctgctggtgtcgaggtcagacgaggac
aacatcagctcctacctacaactcatcgacaagtgccttatccatgagtccttcactgag
acgcagaagaagaggctgttgtcatggaaacaacaggtccagaggctgttccggtccatt
cctaggaaaaccctccttgacatagcagggtaccgaccgcagaggagccgtggattcggc
cagtccaactcgctccccaccgctagctgtgttgggagcagcgtgtcggccaggaggagc
cttcgccagttccagatgccctccaggagcttgcctggtgccaggctgagcctgctgggc
agcggggggctgctgggacccacacctcggagctccagcagcacgcccaccggccccaaa
caggggagacaaggtctgtggtttgccaaccccggaggcagcaacagcatgcccagtcgg
acccacagctccgtgcagcggacccgctccctgccggttcacactacgccacaaaccatg
gtcatgttccagcaagccgatcttcagttaccagtgacggagccagacatcaacaatcgc
cttgagtctctgtgtctgagtatgacagagcacgccttgggagacggagccgaccgcaca
tcaacaatatga
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