Scomber japonicus (chub mackerel): 128355398
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Entry
128355398 CDS
T09718
Symbol
vps35
Name
(RefSeq) vacuolar protein sorting-associated protein 35
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
128355398 (vps35)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128355398 (vps35)
Membrane trafficking [BR:
sjo04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
128355398 (vps35)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FerA
Motif
Other DBs
NCBI-GeneID:
128355398
NCBI-ProteinID:
XP_053171615
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Position
1:complement(3202668..3225168)
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AA seq
798 aa
AA seq
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MPTTQQSPQDEQEKLLDEAVQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSP
KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVR
SFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDDGEQSEGTEEMTGDIND
SIDFVLLNFAEMNKLWVRMQHQGHSRDREKREKERQELRILVGTNLVRLSQLEGVNVEKY
KQVVLPGVLEQVVNCRDSLAQEYLMECIIQVFPDEFHLQTLNPFLRSCAELHQHVNVKNI
IIALIDRLALFAHREDGPGIPTEIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLA
MKCYPDRVDYVDKVLESTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLQL
KHFPPLFEYFDYESRKSMSCYVLSNTLDYNTTIVAQEQVDAILNLVSTLIQDQPDQPADD
PDPEDFAEEQSLVGRFIHLLHSEDPDQQYLILNTARKHFGAGGNQRIRYTLPPLVFAAYQ
LAFRYKENSSSDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFEN
HETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMRCFSEENHEPLRTQCALAAS
KLLKKPDQCRAVSICAHLFWSGRSTDKNGEEIRDGKRVMECLKKALKIANQCMDPSLQVQ
LFIEILNRYVCFYERENDAVTVQVLNQLIQKIREDLPNLEASEETEQINKHFHNTLEHLR
LQRESPESEGPVYEGLVL
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgccgaccacacagcagtctcctcaggatgagcaggagaagcttctggatgaagctgtg
caggctgtgaaggtccagtcgttccagatgaagcgatgtctggacaagaacaagctgatg
gatgctctgaagcatgcctctaacatgctgggtgagctgaggacctccatgctttctcca
aagagctactatgagctctatatggctatttctgatgaacttcactacctagaggtttat
ctaactgatgagtttgccaaaggacgcaaggtggcagatctctatgagttggtacagtac
gcaggcaacatcatcccaaggctctatctgctgatcacagtgggtgtggtgtacgtccgt
tccttccctcagtctcgtaaagacattctaaaggacctggtggagatgtgtcgcggtgtg
cagcatccactcagaggcctcttcctcagaaactatctgttgcagtgcacccgcaacata
ctgccagatgatggagagcagtcagaaggaacagaggagatgaccggcgatatcaacgac
tccattgactttgtccttctgaactttgcggaaatgaacaagttatgggtcagaatgcag
catcagggtcacagccgagatcgagagaagagagaaaaggaaagacaagagctgaggatt
ctggtgggcaccaacctagttcgccttagccagctcgagggtgtgaatgtggaaaagtac
aaacaggttgttcttcctggagttctggagcaggttgtgaactgcagagactctttggct
caggagtatctaatggagtgcataattcaggtgttccctgatgagttccaccttcagact
ctgaaccctttcctgcgttcctgtgctgagctccatcaacacgtcaatgtcaagaacatc
atcatagccctcattgacagacttgccctgttcgctcatcgagaagacggccccggcatt
ccaactgagatcaaactgtttgatatcttctctcagcaagttgccactgtcattcagtct
cgtcaggacatgccatcagaggacgtggtctctcttcaggtttctctcatcaatctggcc
atgaagtgctatcctgatcgtgtggactatgtagataaagtcctggagagcactgtggag
atattcaacaagctaaacttggaacacatagcgaccagcagtgcagtgtcaaaggaactc
accagactgttgaagatcccagtggacacctacaacaacatcctgacagtgctgcagctc
aaacacttccctccgctcttcgagtactttgactatgagtcacgcaagagcatgagctgc
tacgtgctgagcaacacactggactacaacaccaccatcgtggcccaggagcaggtggat
gccatcttgaacttggtatccacgctgatccaggaccagccagaccaaccagctgatgat
cccgaccctgaagactttgctgaggagcagagcctcgtgggtcgtttcattcacctgctc
cactctgaagatccagaccaacagtatcttattctcaacacagcacgtaaacactttggt
gcgggtggaaaccaaaggattcgctacactctccctcctctggtgttcgctgcctatcag
ctggccttcagatacaaagagaactcctcatcggatgacaagtgggagaagaaatgtcaa
aagatcttttccttcgcccaccagaccatcagtgctctaataaaggctgagctggctgag
ctgcctctacgactcttcctgcagggtgcgctggctgcaggagagattggctttgaaaac
cacgagactgtagcttatgagttcatgtcacaggccttctctctgtatgaggatgagatc
agtgactctaaagcccagctggcagccatcaccctgatcatcggtacctttgagcgaatg
cggtgtttcagcgaggaaaaccacgagcctctgagaacccagtgtgcgctggctgcctcc
aagctgctgaagaaaccggaccagtgccgagctgtcagtatctgcgcacacctcttttgg
tcaggacgcagcaccgacaaaaatggtgaagagatccgtgatggtaaacgggtaatggag
tgtttaaagaaagccctgaagatcgccaaccagtgcatggacccatcactgcaagtccag
ctgttcattgaaatcctcaacagatacgtgtgcttctatgagagggaaaatgatgcggtg
actgtccaggtattgaaccaactgatccaaaagatcagagaggatcttcccaacctggag
gcgagtgaggaaacggagcaaatcaacaaacacttccacaacacactcgagcatcttcgc
ctgcagagagaatccccagagtctgagggccctgtctatgagggcttggtcctttaa
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