Scomber japonicus (chub mackerel): 128355430
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Entry
128355430 CDS
T09718
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM39-like
KO
K12012
tripartite motif-containing protein 35
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128355430
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128355430
BRITE hierarchy
Motif
Pfam:
PRY
zf-RING_UBOX
SPRY
zf-B_box
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
U-box
zf-RING_5
zf-Nse
zf-rbx1
zf-RING_6
zf-ANAPC11
Prok-RING_4
zf-RING_10
Perilipin
PEHE
DUF4618
Motif
Other DBs
NCBI-GeneID:
128355430
NCBI-ProteinID:
XP_053171644
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All DBs
Position
3:complement(39397125..39398561)
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AA seq
471 aa
AA seq
DB search
MASRSEEDLCCPVCHEVFRDPVVLSCSHSFCKDCLKSWWREKPTHECPVCKKRSSMNPPR
NLALKNLCESFLQDRDQRASEALCSLHSEKLKLFCLDHQQPVCLVCRDSEKHTNHRFRPI
DEAAQQHKKELEETLKPLKEKLKVCEEVKVKFDQTAKHIKVQAQHTERQIKEQFKKLHQF
LEEKEEARMAALREEEEQKSQMMKEKMEALSREIAALSHTVRATEEELRAEDVSFLKNYK
AAVERVQRCPLLDDPQLPSGALIDQAKHLGNLAFNIWNNMKEMVSYTPVILDPNTAHTKL
ILSEDLTSVRYEEGQQLPDNPERIQDYMSVLGSEGFNSGTHSWDVDVGDSTFWRLGVLSE
SVQRKGRIQSGLWRIGFYNEKYSVVSPSSSSTVHPVMKLQRIRVNLDWKRGYLSFSDPDT
NTHIHTFTHTFTDTLFPFIYTGDELPLKIPPLDVSVTLKHSSDYDNDVYDM
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagatcagaggaggatctctgctgtccggtctgtcatgaggtctttagagat
cctgttgttctgtcatgtagccacagcttctgtaaagactgtctgaagagctggtggaga
gagaaaccaacacatgagtgtccagtttgtaagaaaagatcttcaatgaatccacctcgt
aacctggcgttaaaaaacctgtgtgagtccttcttacaggacagagatcagagagcttca
gaggctctctgcagtctgcactctgagaagctcaaactcttctgtctggaccatcagcag
ccagtgtgtctcgtctgcagagattcagaaaaacacaccaaccacagattcagacccatc
gatgaagctgcacaacaacacaagaaggaacttgaggaaactctgaagcccttaaaggag
aagttaaaggtttgtgaagaagttaaagtgaagtttgatcaaacagcaaaacacattaag
gtccaggcccaacacacagagaggcagattaaggagcagtttaagaagcttcaccagttt
ctagaagagaaagaggaggccaggatggctgctctgagggaggaagaggagcagaagagt
cagatgatgaaggagaagatggaggctctgagcagagagatagcagctctttcacacaca
gtcagagccacagaggaggagctgagagctgaagacgtctcattcctgaaaaactacaag
gctgcagtggaaagagtccagcgctgccccctgctggatgatccacagctgccctcagga
gctctgatagaccaggccaaacacctgggcaacctggccttcaacatctggaacaacatg
aaggagatggtctcctacactcctgtcattctggatccaaacactgctcatactaaactc
atcctgtctgaagatctgaccagtgtgagatatgaagaaggacagcagcttcctgataat
ccagagaggattcaagattacatgtctgtcctgggctctgagggctttaactcagggaca
cacagctgggatgtcgacgttggagacagtacattctggagactgggtgtgttatcagag
tctgttcagaggaagggacgcatacagtctggattatggagaataggtttctataatgaa
aaatactcagtagtgtcaccatcatcttcctccactgttcatccagtcatgaagctccag
aggatcagagtgaatctggactggaagagaggatatctgtcgttctctgatcctgatact
aacacacacatacacaccttcacacacactttcactgacacactgtttccattcatttac
actggggacgaactcccactgaagattcctccactggacgtctctgtgacactgaaacac
agcagtgattatgataatgatgtgtatgacatgtaa
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