Scomber japonicus (chub mackerel): 128355668
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Entry
128355668 CDS
T09718
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM39-like
KO
K12012
tripartite motif-containing protein 35
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128355668
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128355668
BRITE hierarchy
Motif
Pfam:
PRY
zf-RING_UBOX
SPRY
zf-B_box
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
U-box
zf-C3HC4_3
zf-RING_2
zf-RING_5
zf-Nse
zf-rbx1
Prok-RING_4
zf-RING_6
zf-ANAPC11
DUF2067
DUF4618
PEHE
Rad50_zn_hook
PIN_8
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
128355668
NCBI-ProteinID:
XP_053171968
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All DBs
Position
3:37970751..37986217
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AA seq
581 aa
AA seq
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MASRSEEDLCCPVCHEVFRDPVVLSCSHSFCKDCLKSWWREKPTHECPVCKRRSSRTEPP
RNLVLKNLCESFLQDKDQGASEALCSLHSEKLKLFCLDHQQPVCLVCRDSEKHTNHRFRP
IDEAAPQHKKELEETLKPLKEKLKVCEEVKVKFDQTAEHIKVQAQHTERQIKDQFRKLHQ
FLEEEEEARMAALREEEKQKSQMMKEKMEALSREIAALSHTVRATEEELRAEDVSFLNNY
KAAVERVQRCPLLDDPQLPSGALIDQAKHLGNLAFNIWNNMKEMVSYTPVILNPNTAGLN
LSEDLTSVRCEGEKQQLPDNPERFDYYYSVLGSEGFNSGTHSWDVEVGDSGHWLLGVLSE
SVERKGRIQSGLWRIRFYNDKYSAYSPSSPITVLPVKKKLQRIRVNLDWNRGNLSFSDPD
TNTHIHTFTHTFTDTLFPYIYTWFTALRDLPLMENPHTEGGSQDYYSIHRTQLQVDPDHV
TSVRLILKQPSAAWLSFSLEDIKIYPHMEPDPEKEVSDWLSDLTLIDQHPDLEGLPDPQT
VSSSLQQMWALTEVMQTNQTTASIGRFDVDGCYDINLLSLT
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagatcagaggaggatctctgctgtccggtctgtcatgaggtctttagagat
ccagttgttctgtcatgtagccacagcttctgtaaagactgtctgaagagctggtggaga
gagaaaccaacacatgagtgtccagtttgtaagagaagatcttcaaggactgaaccacct
cgtaacctggtgttaaagaacctgtgtgagtccttcttacaggacaaagatcagggagct
tcagaggctctctgcagtctgcactctgagaaactcaaactcttctgtctggaccatcag
cagccagtgtgtctcgtctgcagagattcagaaaaacacaccaaccacagattcagaccc
atcgatgaagctgcaccacaacacaagaaggaacttgaggaaactctgaaacccttaaag
gagaagttaaaggtttgtgaagaagttaaagtgaagtttgatcaaacagcagaacacatt
aaggtccaggcccaacacacagagaggcagattaaggatcagtttaggaagcttcaccag
tttctagaagaggaagaggaggccaggatggctgctctgagggaggaagagaagcagaag
agtcagatgatgaaggagaagatggaggctctgagcagagagatagcagctctttcacac
acagtcagagccacagaggaggagctgagagctgaagacgtctcattcctgaacaactac
aaggctgcagtggaaagagtccagcgctgccccctgctggatgatccacagctgccctca
ggagctctgatagaccaggccaaacacctgggcaacctggccttcaacatctggaacaac
atgaaggagatggtctcctacactcctgtcattctgaatccaaacactgctggtctaaac
ctgtctgaagatctgactagtgtgagatgtgaaggagagaaacagcagcttcctgataat
ccagagaggtttgattattattactctgtcctgggctctgagggctttaactcagggact
cacagctgggatgtcgaggttggagacagtggtcactggttactgggtgtgttatcagag
tctgttgagaggaagggacgcatacagtctggattatggagaataaggttctataatgat
aaatactcagcatattcaccatcatctcccatcactgttctcccagtgaagaagaagctc
cagaggatcagagtgaatctggactggaacagaggaaatctgtcgttctctgatcctgat
actaacacacacatacacaccttcacacacactttcactgacacactgtttccatacatt
tacacttggttcactgctctgagagacctgccgctgatggagaacccccacactgagggg
gggtcccaggactactactccatccacaggacacaactgcaggtggatcctgatcatgtg
acgtctgtcagactgatcctgaagcagccgtctgcagcctggttgagcttcagcctggag
gacattaagatctacccccacatggagccggatccagagaaggaggtttctgattggctc
tctgatctgaccctgatcgaccagcatcctgatctggagggcctcccggaccctcagacg
gtctcctccagcctccagcagatgtgggctctgacggaggtgatgcagaccaaccagacc
accgcctccatcggccgcttcgacgtggacggctgctatgatatcaacctgctgtctctc
acatga
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