Scomber japonicus (chub mackerel): 128355682
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Entry
128355682 CDS
T09718
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM39-like
KO
K12012
tripartite motif-containing protein 35
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128355682
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128355682
BRITE hierarchy
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_4
zf-B_box
zf-C3HC4_2
zf-C3HC4_3
U-box
zf-RING_2
zf-Nse
zf-RING_5
zf-rbx1
Prok-RING_4
zf-ANAPC11
zf-RING_6
DUF2067
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
128355682
NCBI-ProteinID:
XP_053171983
LinkDB
All DBs
Position
3:37914539..37916340
Genome browser
AA seq
467 aa
AA seq
DB search
MASRSEEDLCCPVCHEVFKDPVLLSCSHSFCKDCLKSWWRQKPTHECPVCKRRSSKTEPP
LNLVLKNLCESFLQDRDQRASEALCSLHSEKLKLFCLDHQQPVCHICSHSETHTNHRFRP
IDEAAPQHKKELEETLKPLKEKLKVCEEVKVKFDQTAKHIKVQAQHTERQIKDQFRKLHQ
FLEEEEEARMAALREEEQQKSQMMKEKMEALIRETAALSHTVRATEEELRTEDVSFLNNY
KAAVERVQRCPLLDDPQLPSGALIDQAKHLGNLAFNIWNNMKEMVSYTPVILDPNTAGLN
FFPGVVFLVSDLTSVRCEGEKQQLPDNPERFDYYYSVLGSEGFNSGTHSWDVEVGDSGHW
SVGVLSESVERKGRIQSGSWRICFYNDKYSAYSSSSPSTVLPVKKKLQRIRVNLDWNRGN
LSFSDPDTNTHIHTFTHTFTDTLFPFIDTNVKLKISPLKVSVTKQQV
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagatcagaggaggatctctgctgtccggtctgtcatgaggtctttaaagat
cctgttcttctgtcatgtagccacagcttctgtaaagactgtctgaagagctggtggaga
cagaaaccaacacatgagtgcccagtttgtaagagaagatcttcaaagactgaaccacct
ctaaacctggtgttaaagaacctgtgtgagtccttcttacaggacagagatcagagagct
tcagaggctctctgcagtctgcactctgagaaactcaaactcttctgtctggaccatcag
cagccagtgtgtcacatctgcagtcattcagaaacacacaccaaccacagattcagaccc
atcgatgaagctgcaccacaacacaagaaggaacttgaggaaaccctgaagcccttaaag
gagaagttaaaggtttgtgaagaagttaaagtgaagtttgatcaaacagcaaaacacatt
aaggtccaggcccaacacacagagaggcagattaaggatcagtttaggaagcttcaccag
tttctagaagaggaagaggaggccaggatggctgctctgagggaggaagagcagcagaag
agtcagatgatgaaggagaagatggaggctctgatcagagagacagcagctctttcacac
acagtcagagccacagaggaggagctgagaactgaagacgtctcattcctgaacaactac
aaggctgcagtggaaagagtccagcgctgccccctgctggatgatccacagctgccctca
ggagctctgatagaccaggccaaacacctgggcaacctggccttcaacatctggaacaac
atgaaggagatggtctcctacactcctgtcattctggatccaaacactgctggtctaaac
ttcttccccggagttgtctttctggtttctgatctgaccagtgtgagatgtgaaggagag
aaacagcagcttcctgataatccagagaggtttgattattattactctgtcctgggctct
gagggctttaactcagggactcacagctgggatgtcgaggttggagacagtggtcactgg
tcagtgggtgtgttatcagagtctgttgagaggaagggacgcatacagtctggatcatgg
agaatatgtttctataatgataaatactcagcatattcatcatcatctccctccactgtt
ctcccagtgaagaagaagctccagaggatcagagtgaatctggactggaacagaggaaat
ctgtcgttctctgatcctgatactaacacacacatacacaccttcacacacactttcact
gacacactgtttccattcattgacactaatgttaaactgaagatttctccactgaaggtc
tctgtgacaaaacaacaggtgtga
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