Scomber japonicus (chub mackerel): 128355930
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Entry
128355930 CDS
T09718
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128355930 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128355930 (smarcd1)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128355930 (smarcd1)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128355930 (smarcd1)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128355930 (smarcd1)
PBAF complex
128355930 (smarcd1)
GBAF(ncBAF) complex
128355930 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
128355930
NCBI-ProteinID:
XP_053172293
LinkDB
All DBs
Position
3:26290697..26309173
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AA seq
514 aa
AA seq
DB search
MAARGGFQSAPTGGGGGAMGPGPPVPGAGPGMGPGTPSGRMGPSSAAQNHMYRSPMPGPG
YPRPGMPPSSRMTPQGPAMGPPGYGNSPVSRPGMPGVMDPSRKRPAPQQIQQVQQQNRNQ
HTKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRK
LRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLV
IELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRL
ARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRL
HALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLD
NKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVANPEEERRAEF
YYQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagaggggggtttcagtcagcaccaactggaggtggtggcggagcaatggga
cctggacctccggtaccgggtgcaggaccgggcatgggccctgggactccctctggaagg
atgggaccgtcgtcggcggcgcagaaccatatgtaccgctccccgatgcccgggcccggt
tacccgagaccgggtatgcctccatccagccgtatgaccccgcagggacccgccatggga
cccccaggatatggtaacagccctgtgtctcgccccgggatgcctggcgtgatggacccg
tctcgcaagaggcccgcaccccaacagattcagcaggttcagcagcagaaccgcaaccag
cacacaaagaagaagaagatggctgataaaattctacctcagaggatcagggaactggtc
ccagagtctcaggcttacatggatctattggcttttgagaggaagctggaccagaccatc
atgcgcaagaggttggacattcaggaggctcttaagaggcccattaagcaaaagagaaag
ctccggatcttcatatccaacaccttcaaccctgcgaagcctgacgccgaggacggagag
ggcacagtggcatcgtgggagctgcgtgttgaggggcgtctgcttgaagatacggccgtg
tccaagtatgaagccactaaacagaagaggaagttctcctctttcttcaagtccctggtg
attgagttggacaaggacctgtacggtccagataatcaccttgtggaatggcataggacc
gccaccacccaggagactgatggtttccaggtgaagaggccaggtgacgtgggtgtccgc
tgcaccgtcctgctcatgctggactaccagccccctcagttcaagctggacccccgactg
gctcgtatgctgggcatccacacccagaccagacctgtcatcatccaggctctgtggcag
tacgtcaagactcacaagctccaagacccccatgagcgcgagttcatcaactgtgacaaa
tacctgcagcagatctttgagacccagcgaatgaagttctctgagatcccgcagcgcctg
catgcactcctgatgcctccagagcccatcatcatcaaccatgtgatcagcgtggatcct
aatgaccaaaagaagactgcttgctatgacattgacgtggaggtggacgacacactgaag
acccagatgaactcttttctgctctccacggccagtcagcaggaaatagccgggctggac
aacaagatccatgaaaccattgagaccattaaccagctgaagacccagagagagttcatg
ctgagttttgccagagatcctcagggctttatcaacgactggctgcagtcccagtgcaga
gacctcaagaccatgacagatgtggttgcaaacccagaagaagagcgaagagccgagttc
tactaccagccatgggcccaggaagcagtctgtcgctacttctactccaaggtccagcag
agaagacaggagctggagcaggcgctcggcatcaggaacacctaa
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