Scomber japonicus (chub mackerel): 128356154
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Entry
128356154 CDS
T09718
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sjo03009
]
128356154 (ddx21)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128356154 (ddx21)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128356154 (ddx21)
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
Pre-60S particles
Helicases
128356154 (ddx21)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128356154 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
ResIII
CMS1
AAA_30
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128356154
NCBI-ProteinID:
XP_053172581
LinkDB
All DBs
Position
1:18211745..18221465
Genome browser
AA seq
749 aa
AA seq
DB search
MPSKIIFDTEDQTMDEDIDTAAEAKALKKKLKKKKQLEDQEQMEEPDCEPPAPKKKKKKD
KLVADQVDGHMEEATDMNGNSNDVETPKKKKKDKKNTEVDTEKKKKQKKAVAEEATNGHS
IPNTPLQTPIQTPSQSSEDSASEGEKEPEETPEQKEGAFSNFRISPDTIVKLKARGVSYL
FDIQVKTFNHVYDGEDVLAQARTGTGKTFSFAIPLVEKLQRESVEKNRGRAPKVLALAPT
RELAIQVAKDFKDVAKRLSIACFYGGSSYNPQIDAIRNGIDVLVGTPGRIKDHIQNNKLD
LSKLKHVVLDEVDQMLDMGFAEQVEEILAASYKKDSESNPQTLLFSATCPPWVYEVAKKY
MRPECKHIDLIGKKTQRAATTVEHLAIACHWSQRASVIGDVIQVYSGSHGRTIVFCETKK
EANELSMNTSIKQSTQSLHGDIPQKQREITLKGFRNGTFEVLVATNVAARGLDIPEVDLV
VQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVENKAGITFRRVGVPTAN
DIIKSSSKDAVRFLDSVPVTAIAYFRQSAEKLIEERGAVDALAAALAHISGATSLEQRSL
LNSDAGYTTVQLVCSQELNNLGYAWRTIKEQLGEEMENHIHRMTFLKGKTGVCFDVPADK
IKEIQETWQDGRRWQLTVATELPELEEKAGNRGGFGGGQRGDRGGGFRGGRGRSFGGHGG
RGNGFRSGGGGYGNNRGGHKRNFSQAFDY
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaaaaataatctttgacaccgaggatcaaaccatggacgaagacatcgatacg
gccgcggaggctaaagccctgaagaagaagcttaagaagaaaaagcagttggaggatcag
gagcagatggaggagccagactgtgaacctccagcaccaaaaaagaaaaagaaaaaagac
aagctggttgcggaccaagtggacggccacatggaggaggctacagacatgaatggcaac
agcaatgatgtggaaacaccgaagaagaagaagaaggataaaaagaacacagaagtagac
acagagaaaaagaagaagcaaaagaaagcagttgctgaggaggcaaccaatggacattcc
atcccaaacacaccccttcagacaccgatccagacaccatcccagtcaagtgaagactca
gccagtgaaggagaaaaagaaccggaggagacacccgagcagaaagaaggagccttttcc
aacttcagaatctccccagacaccatcgtgaaactaaaagctcggggagtctcttacctg
tttgacattcaggtaaagacatttaatcatgtgtacgatggagaagacgtacttgcccaa
gcccgaacaggaacaggaaagactttctcattcgccatcccgttggtggagaagctccag
agggaatcagtggagaagaatagaggccgggctcccaaggtcttggctttagctcccacc
agagagttggctatacaggtcgctaaggacttcaaagacgtcgccaagagactttctatt
gcctgtttctatggaggcagctcatacaacccacagatcgacgcaattcgcaatggtatt
gatgttttggttggaacccccggtcgcatcaaagaccacattcagaacaataaactcgac
ctttctaaactgaaacacgtcgtcctggatgaagtggaccaaatgctggacatgggattt
gccgaacaggttgaagaaattttggctgcatcttataagaaagactccgaatccaaccca
caaactctgctgttttcggccacctgccccccctgggtttacgaggtggccaagaaatac
atgagaccagagtgcaaacatattgaccttattggcaagaaaacacagagagctgcaacc
actgtggaacatctggccatagcgtgtcactggtcacagcgtgcgtcggtgataggagat
gtgatccaggtttatagtggcagccacggcagaaccattgtcttctgtgagaccaagaaa
gaggccaatgaactctccatgaatacgtccattaaacagagtacacagtccctccatggt
gatattccccagaaacagagagagataactctgaagggcttcaggaatggcacatttgag
gttctggttgccaccaacgttgcagcccgtgggttagatatccctgaagttgacctggtg
gtccagtgttctccacccaaggatgtggagtcatacattcatcgttcaggtcgtacaggg
cgtgcaggcaggactggagtctgcatctgtttctaccagaggaaagaagaggaccagcta
cgctatgtagaaaacaaagctggcatcacattcagacgagttggcgttcccaccgccaat
gacatcatcaagtcatcaagcaaagatgccgtcaggttcctggactctgttccagtcaca
gctatcgcatacttcagacagtctgcagagaagctgattgaggagagaggagcagttgat
gcactagccgctgcactcgcacatatttctggagccacaagtctagagcagaggtcactg
ctcaactctgatgctggttacaccactgtgcagctggtgtgttctcaagaattgaataat
ctgggttacgcctggagaaccatcaaagaacagctcggagaagagatggagaaccacatt
cacagaatgaccttcctcaaaggcaaaacaggagtttgctttgatgtcccggctgacaaa
atcaaggagatccaggagacctggcaggacggtcgccgttggcaactgactgtagccaca
gagctcccagagctggaagagaaggccggtaatcgtggtggatttggtggcggtcaacgc
ggtgacagaggaggaggattcagaggtggacgaggccggagttttggcggacacggtggt
cgtggtaacgggttccggagtggcggtggtggctatggcaacaacagagggggacacaaa
cgcaacttcagccaagcttttgattactga
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