Scomber japonicus (chub mackerel): 128356748
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Entry
128356748 CDS
T09718
Symbol
exosc10
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128356748 (exosc10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128356748 (exosc10)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
128356748 (exosc10)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Lipase
Motif
Other DBs
NCBI-GeneID:
128356748
NCBI-ProteinID:
XP_053172849
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All DBs
Position
4:14834908..14846216
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AA seq
893 aa
AA seq
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MMDSSKSKDSSNSGREDSNTDNNEDEKAELCPGFKDADAFVKYGLGAVLSATKASASLPQ
AGDEFDFYRSFPGFQEFCETQGDKLLHCMSQIMQHHGCRSHMRDRNKLTGLEERFDLVVD
SNDVILERVGILLDDADGVNRGQQPVMPAGYQPPKIVVSSWNRKGSSSSSRSGTFKLLHA
KNIMRPQLKFKEKVDNSNTPFIPKIFIKPNAIKSLPSYFTNKQIRKERPEDLDVPAALAD
FIHQQRTQEHVEDMFAHPYKYELDHLTVAENLLSKPEPQMYKPITETKCSYIETLEDLVA
LNEKLCKLSEFAVDLEHHSYRSFLGLTCLMQISTRDEDFIIDTLELRSEMYILNEAFTDP
AIVKVFHGADSDIEWLQRDFGLYVVNLFDTHQASRALNLARHSLDHLLKHFCKVDSDKRY
QLADWRIRPLADEMVQYARTDTHYLLYIYDCVRAQLLDFNYGQPGLLQSVWNKSKDISLK
KYVKPIYTEESYLELQRKQKRSFNTQQLTAFRLLFAWRDKLGRQEDESTGFVLPTHMMIK
ISEELPKEPQGIIACCNPVPPLVRQQVNELHLLVQEAREMPLLKAEIAAQKKKGLTPIKK
PEVTLFGPHDTSRVSESDLPHFSADELPVKQGVLFSDDEHKMDVDVQKTSGLTAEAKITL
FEELETKIDEESLSVGQMKARRIIESFENPFRMYLPSNDVHISKNAKFDPSSKIFEISKR
WKLMSIEQQQKELESKRKAREEAKEHVKKVAEERKKAKQSYQESLQNVATVRQQAAEYAK
GEAKKRERPASEVGESTPKPSKKLMKSAEQPQKTEPPPQDTFKPFNYNQSDMKVFAGNKA
KDNTQFDPNRQNQDSKKRKTPKGQKSNFGPGNRSMSYLTGKSERGFRHNWPKR
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgatggattcttcaaagagtaaagactcatccaatagtggccgtgaggacagtaataca
gacaacaacgaagatgaaaaagccgagttgtgtcccggtttcaaagacgcagatgccttc
gttaaatatggacttggtgctgtattatcagccaccaaagcatctgccagcttgcctcaa
gctggagatgaatttgatttctatcgaagcttcccgggcttccaggagttctgtgaaact
cagggagataagctcctgcactgcatgagtcagataatgcagcaccatggctgcagatct
cacatgagagaccgcaacaagctgacggggttggaggagaggtttgacttggttgtggac
tcaaacgatgtcatcctcgaaagagtggggattcttcttgatgacgctgacggggtgaat
aggggccagcagcctgtcatgcctgcagggtatcagcctcccaagattgtcgtctcgagc
tggaatcgcaagggttcaagctcttccagtcgttctgggacgttcaaactgctccatgcc
aagaacattatgaggcctcagctgaaattcaaggaaaaagtcgacaacagcaacacgccc
tttattcccaagatcttcatcaagcccaacgcaataaagtctcttccttcttatttcacc
aacaaacaaatccgaaaagagagacctgaggatctggatgtcccggctgccctggctgac
ttcattcaccagcagagaactcaggaacatgttgaagacatgtttgcacacccatataaa
tatgaactggatcatcttacagtagcagaaaatcttctgtcaaagccagaacctcagatg
tacaaaccaataacggagacaaagtgctcctacattgaaacactggaagatctggtggct
cttaacgagaagctctgcaaactgtctgaatttgctgtggatctggagcaccattcctac
aggagtttcctcggcctcacctgtctgatgcagatctccaccagagacgaggacttcatc
atcgataccttggagctccgcagtgagatgtacatcctgaacgaggcgttcactgacccg
gctatcgtcaaagtatttcacggtgcagactctgacattgagtggctccagagagacttc
ggcttgtatgtggtcaacctcttcgacacacatcaggccagtagagccctgaacctggcc
agacattccctcgaccacctgctcaaacacttctgcaaagtggactcggacaaacgctac
cagcttgctgactggaggattcgcccattggcagatgagatggtgcagtatgcacggaca
gacacccactacctcctttacatctacgactgtgtgagggcgcagctgttggacttcaac
tacgggcagcctggcctgctgcagagtgtctggaataagagcaaagacatttccctgaag
aaatatgtgaagcctatatacacagaggagtcctatttggagctgcagaggaagcagaaa
aggtcttttaacacccagcagctcactgccttcagactgctgtttgcctggagggacaag
ctgggcaggcaggaagatgaaagcaccggatttgtgctgccaactcacatgatgatcaaa
atatcagaggaattgcccaaggagcctcagggcatcattgcctgctgtaaccctgtgccc
ccactggtgaggcagcaggtcaacgagctccatttgttagtgcaggaagctagagaaatg
ccgctccttaaggctgaaattgcagctcaaaagaagaaaggactcacgcccataaaaaag
ccagaggttaccttgtttggtcctcacgatacatccagggtctctgagagcgatctcccc
cacttttctgctgatgaactgcctgttaaacaaggggtgctcttttcggatgatgagcac
aaaatggatgttgatgtccagaaaacaagtggtctcactgcagaagccaaaatcacactg
tttgaggagctggaaacaaagattgacgaagagtccctctctgtgggtcagatgaaagcc
agacgcatcattgagtcttttgaaaaccctttcagaatgtatctaccatccaatgatgtg
cacatcagcaagaatgccaagtttgacccctcttcaaaaatatttgagatcagtaaaaga
tggaaactgatgagtattgaacagcagcagaaggagttggagtccaagaggaaagccagg
gaagaagcaaaggaacatgtgaagaaagtggcagaggaaagaaagaaggctaaacagagc
taccaggagtctctacagaacgttgccaccgttcgtcagcaagcagcggaatatgcaaaa
ggcgaagcaaagaagagagagaggcccgccagcgaggttggagagtcaactcccaagccg
agtaagaaactgatgaaatctgcagagcagccccagaagacagaaccacctccccaagac
accttcaagcctttcaactacaatcaatcagacatgaaagtatttgctggtaacaaggcg
aaggacaacacacagtttgatccgaaccggcaaaaccaagattctaagaaaaggaaaact
cccaaaggacaaaaatctaattttggtcctggaaaccgaagtatgtcgtacctgactgga
aaatctgagagaggattccggcataactggcccaaaagatag
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