Scomber japonicus (chub mackerel): 128356753
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Entry
128356753 CDS
T09718
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03250
Viral life cycle - HIV-1
sjo04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
128356753 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
128356753 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128356753 (samhd1)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
128356753 (samhd1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_2
HD
SAM_1
HD_assoc_2
AbiTii
PDEase_I
Motif
Other DBs
NCBI-GeneID:
128356753
NCBI-ProteinID:
XP_053172853
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All DBs
Position
4:20192156..20203697
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AA seq
626 aa
AA seq
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MESRKRPLEADLTADCSFKTPEKRVSVVPLHDSDYMRWGVEGTCQYLRREGLEEWEDIFR
EQKITGVGLRYLNDAELEKIGIQCLGDRLQILHSLGKLWHVEAEQSKVFNDSIHGHVELH
PLLVKIMDTPQFQRLRNIKQLGATYFVFPGASHNRFEHSIGVGYLAGQLVQALNERQPEL
LISRRDALCVQIAGLCHDLGHGPFSHMFDGMFIPKARPGIKWKHEAASLEMFDYLVKDND
LKPVMEEHGLVLPEDLDFIKEQIAGPLNTNVAQGKKWPYKGRGEDKSFLYEIVANKRNGI
DVDKWDYFARDCYHLGIQNNFDYRRFLKFARVCEVDGQKHICTRDKEVGNLYDMFHTRNC
LHRRAYQHKVGNIIETMITEAFLKADKYIQIEGKGGKKFTLSEAIDDMEAYTKLTDHVFE
QILNSSSSELTEARQILRNITCRRLYKCLGQTQPDKFMNVTRELLLGWEADLARSFPQGG
AKDVGLQPEDFIVNVIYMDYGMKEKNPINSVRFYCKNDLTTAIQIRKNQVSKLLPEHFAE
QLIRVCFKKTDDRSLEMAKKHFVQWCMDKNFSKPQDGDIIAPELTPLKASWSNNNEGDDG
GDGSSKEANWPRVNGQEKAKTKLSFK
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggagagtcggaaacgaccgctggaggccgatttgaccgcggattgcagcttcaaaaca
ccggagaagagagtgtccgttgtcccgctgcatgactcggactatatgcgatggggagtg
gagggaacgtgtcagtatctgcgaagagagggtctcgaagagtgggaagatatatttaga
gaacaaaagatcactggtgtggggctgagatatctgaacgatgctgaactggagaagatt
ggcatacagtgtcttggtgatcgcttgcagatcctgcacagccttgggaagctgtggcat
gtagaagcggagcaaagtaaggtgtttaatgatagcatccacggccatgtagagttacac
ccactcctcgtcaaaatcatggacacacctcagttccagagactacgaaacattaagcag
cttggggcaacctactttgttttccctggagcatctcacaaccgctttgaacacagcatc
ggagtcggttacttggcaggacaacttgtacaagctctgaatgagaggcagccagaactc
ctcatatctcgtagagatgctctttgtgtgcagatagctggcctctgtcatgacttggga
catggaccattttcccatatgtttgatggcatgttcatccccaaagcacgtccaggaatt
aagtggaagcatgaggctgcctctctggaaatgtttgactacctggtgaaagataatgac
ctgaaaccggtgatggaggaacacggcctggtgctccccgaggacctggacttcatcaag
gagcagattgcaggacctctgaacactaatgtagctcaaggcaagaagtggccatataaa
ggcagaggagaagacaagtccttcctctatgaaatcgtggccaacaaaagaaatggcatt
gatgtggacaagtgggactactttgccagggactgctaccacctgggtatccagaacaac
tttgactatcgccgcttcctaaagtttgctagggtgtgtgaggtggacggccagaagcac
atctgcactagagacaaggaagtgggaaatctttatgacatgttccacacgaggaactgt
ctccacaggagagcctaccagcacaaagtgggaaacatcatagaaaccatgatcacagag
gcctttttaaaggcagataagtacatccagattgaaggcaaaggagggaagaagttcact
ctctctgaagccatagatgacatggaggcctacaccaagctgacagatcatgtgtttgaa
cagatactcaactcttcctcctcggagctgactgaggcaaggcaaattctgcgcaacatc
acctgtcggcgactctacaaatgtctgggccaaacccagccagacaaattcatgaatgtc
acccgggagttgcttctcggctgggaagcagatttggctcgctcctttcctcagggtggt
gccaaggatgtcggtctacagccagaggactttatagttaatgtcatttatatggactat
gggatgaaggagaagaaccccatcaacagtgtgcgtttctattgcaagaatgatctaact
acagccatccagatccgcaagaaccaggtgtctaaacttcttccagagcattttgcggag
cagctcatcagagtttgctttaagaagacagatgacaggagtctggagatggccaagaag
cactttgtgcagtggtgcatggacaagaacttctcaaagcctcaggatggagacataata
gcgcctgagctgacccctctgaaagccagctggtccaacaacaatgaaggcgacgatggt
ggagatggcagctccaaagaagcaaactggcctagggtaaatggacaagagaaagccaaa
acaaagctttcttttaagtaa
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